View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_5 (Length: 587)
Name: NF13993_low_5
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 328 - 582
Target Start/End: Original strand, 31407577 - 31407831
Alignment:
| Q |
328 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgttagttaaagagaggaataagtctgaaaaactgttta |
427 |
Q |
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| T |
31407577 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgtcagttaaatagaggaataagtctgaaaaactgttta |
31407676 |
T |
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| Q |
428 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
527 |
Q |
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| T |
31407677 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
31407776 |
T |
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| Q |
528 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatctcac |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31407777 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcac |
31407831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31407430 - 31407535
Alignment:
| Q |
1 |
tgagacatctctcaataatacctattttgaaaccctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatctacatttaaaa |
100 |
Q |
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||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407430 |
tgagacatctctcaataatacctttgttgaaaacctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatctacatttaaaa |
31407529 |
T |
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| Q |
101 |
tgtcaa |
106 |
Q |
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|||||| |
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| T |
31407530 |
tgtcaa |
31407535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 38493163 - 38493058
Alignment:
| Q |
434 |
aagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttcaactgc |
533 |
Q |
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||||||||||| |||||| || ||||| || |||||||||| || || |||||||||||||||||| ||||||||| | |||||||||||| | || | |
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| T |
38493163 |
aagtacctgcttcaggaaggaaacaaactctttcccatttagagattttccttgtacaatctttggacggattatactagaaacaagctcttttagcttc |
38493064 |
T |
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| Q |
534 |
tccctt |
539 |
Q |
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|||||| |
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| T |
38493063 |
tccctt |
38493058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 38494627 - 38494571
Alignment:
| Q |
35 |
ctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatcta |
91 |
Q |
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|||||||||||| |||| ||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
38494627 |
ctccacaagagaacctgttgatggaatctctcccttgttcaaggcttcaagtatcta |
38494571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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