View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_7 (Length: 516)
Name: NF13993_low_7
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 41804305 - 41804804
Alignment:
| Q |
1 |
aaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804305 |
aaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataat |
41804404 |
T |
|
| Q |
101 |
gctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804405 |
gctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataaaa |
41804504 |
T |
|
| Q |
201 |
tgtgtttggttaatccttacctttggactttgcatgacaacttttgtccttctatagatcacacaagtaacaatatcgcatctagtggcaaagatgctcc |
300 |
Q |
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| T |
41804505 |
tgtgtttggttaatccttacctttggactttgcatgacaccttttgtccttctatagatcacacaagtaacaatatcgcatctagtggcaaagatgctcc |
41804604 |
T |
|
| Q |
301 |
tcaagttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgtgttgtgtcttatattaatatatctatatgtatctaaataaaacaa |
400 |
Q |
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| T |
41804605 |
tcaagttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgtgttgtgtgttatattaatatatctatatgtatctaaataaaacaa |
41804704 |
T |
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| Q |
401 |
tgttgtgtgagtaagaggctaatatgtaacataaaaatttgtagctaaataacctttatgggcagggtatgggctcttcttagatatatgtcttgtggag |
500 |
Q |
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| T |
41804705 |
tgttgtgtgagtaagagactaatatgtaacataaaaatttgtagctaaataacctttatgggcagggtatgggctcttcttagatatatgtcttgtggag |
41804804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 3385029 - 3385483
Alignment:
| Q |
6 |
aaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctga |
105 |
Q |
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|||||||| |||||||| ||||| ||||||| ||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| || |
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| T |
3385029 |
aaaaacaagcatttatatataca-ctatggggaaaaccattgcttcacttgttctagtttcccttgtagtggcaatacttctgaatggttataatgccga |
3385127 |
T |
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| Q |
106 |
ggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgt |
205 |
Q |
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| T |
3385128 |
ggatggaggaagaggtaatcaactgaagaaagatgatgctatttacaaatctcaaaagtttgggcaatgtctagattgtacgattttgtataatatatgt |
3385227 |
T |
|
| Q |
206 |
ttggttaatccttacctttggactttgcatgacaacttttgtccttctatagatcacacaagtaacaatatcgcatctagtggcaaagatgctcctcaag |
305 |
Q |
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| T |
3385228 |
ttggttaatccttacctttggactttgcatgacaagttttgttcttctaatgattacagaagtaacaagatcgcatccagtggcaaagatgctcctcaag |
3385327 |
T |
|
| Q |
306 |
ttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgtgttgtgtcttatattaatatatctatatgtatctaaataaaacaatgttg |
405 |
Q |
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| T |
3385328 |
ttgtaagtgatcttccatgatcaatgatcgtttgtgtttcaatggcttgtgttgtgtgttatattaatatatctatatgtatctaaataaaacaatgttg |
3385427 |
T |
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| Q |
406 |
tgtgagtaagaggctaatatgtaacataaaaatttgtagctaaataacctttatgg |
461 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3385428 |
tgtgagtaagagagtaatatgcaacataaaaatttgtagctaaataacctttatgg |
3385483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 34357101 - 34357232
Alignment:
| Q |
29 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
128 |
Q |
| |
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||||||| |||| |||||| |||| |||||||||||| ||| ||||| ||||| |||||||| ||| |||||||| || |||||||| ||| | || |
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| T |
34357101 |
actatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatg---ctgaatggctatggtgctgagggtgcaggaagagataaccaac |
34357197 |
T |
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| Q |
129 |
caaagaaagatgatggtatttacaaatctcaaaag |
163 |
Q |
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| T |
34357198 |
ataagaaagatgatggtgtttataaatatcaaaag |
34357232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 4218140 - 4218271
Alignment:
| Q |
29 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
128 |
Q |
| |
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||||||| |||| |||||| |||| ||||| ||||| ||||||||| ||||| || |||||| |||| |||||||| | |||||||||||| || |
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| T |
4218140 |
actatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaatttt---gaatggctatagtgctgagggtactggaagaggtaatgaac |
4218236 |
T |
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| Q |
129 |
caaagaaagatgatggtatttacaaatctcaaaagttt |
166 |
Q |
| |
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| T |
4218237 |
ctaa---agatgatcgtatttacaaatctcaaaagttt |
4218271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 4215651 - 4215726
Alignment:
| Q |
87 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
162 |
Q |
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| T |
4215651 |
tgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
4215726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 41814389 - 41814327
Alignment:
| Q |
136 |
agatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataa |
198 |
Q |
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||||||| ||||||||||||||||||| ||| ||| |||| |||||| ||||||||||||| |
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| T |
41814389 |
agatgatcatatttacaaatctcaaaagcttgatcagggtatcgattgtttgattttgtataa |
41814327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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