View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_8 (Length: 494)
Name: NF13993_low_8
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 54 - 477
Target Start/End: Complemental strand, 46953838 - 46953408
Alignment:
| Q |
54 |
acttcacactggatgaggattagtagttcatagaaaattcctagctggtagtttttccacctaattgcaagtttcctccatggaggattaatgtttatct |
153 |
Q |
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| T |
46953838 |
acttcacactggatgaggattagtagttcatagaaaattcctagctggtagtttttccacctaattgcaagtttcctccatggaggattaatgcttatct |
46953739 |
T |
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| Q |
154 |
tagtgtttttgatccctgggcagtgacacatgcattttgattttctcagttgctaaacaaaacttgtaaaaatagaccaagacaaacacggtgttacgtg |
253 |
Q |
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| T |
46953738 |
tattgtttttgatccctgggcagtgacacatgcattttgattttctcagttgctaaacaaaacttgtaaaaatagaccaagacaaacacggtcttacgtg |
46953639 |
T |
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| Q |
254 |
tcatgaagccagataagaattgtttgtcgaatcctgtttcacgaatacgacatctacgtgtagtccccatccaaatccaaactataaacatgaaacttcc |
353 |
Q |
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| T |
46953638 |
tcatgaagccagataagaattgtttgtcgaatcctgtttcacaaatacgacatctatgtgtagtccccatccaaatccaaactataaacatgaaacttcc |
46953539 |
T |
|
| Q |
354 |
aaaacgtaccaaagaaagtatcaaactcttcttaccaaataactccctataaatacattcatttctctatcatattctatcaatacgcctaaactcctag |
453 |
Q |
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| T |
46953538 |
aaaacgtaccaaagaaagtatcaaactcttcttaccaaataactccctataaatacattcatttctctatcatattctatcaatacgcctaaactcctag |
46953439 |
T |
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| Q |
454 |
-------aaccgacattatagtatttcatat |
477 |
Q |
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| T |
46953438 |
aacctagaaccgacattatagtatttcatat |
46953408 |
T |
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