View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13993_low_9 (Length: 493)

Name: NF13993_low_9
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13993_low_9
NF13993_low_9
[»] chr7 (6 HSPs)
chr7 (7-320)||(5104806-5105117)
chr7 (400-477)||(5104110-5104187)
chr7 (402-471)||(5110693-5110762)
chr7 (215-312)||(2344793-2344889)
chr7 (271-312)||(48021496-48021537)
chr7 (223-307)||(24161820-24161904)
[»] chr6 (3 HSPs)
chr6 (179-307)||(32243293-32243425)
chr6 (233-307)||(10101330-10101404)
chr6 (215-300)||(229053-229138)
[»] chr8 (4 HSPs)
chr8 (224-307)||(27116736-27116819)
chr8 (223-310)||(16736441-16736528)
chr8 (223-307)||(11587770-11587854)
chr8 (179-307)||(37505093-37505225)
[»] chr3 (4 HSPs)
chr3 (178-268)||(1501181-1501275)
chr3 (223-306)||(4540595-4540678)
chr3 (215-307)||(48583895-48583987)
chr3 (179-307)||(32100093-32100225)
[»] chr4 (3 HSPs)
chr4 (234-307)||(22233371-22233444)
chr4 (179-307)||(50174498-50174630)
chr4 (223-307)||(37788061-37788145)
[»] chr1 (6 HSPs)
chr1 (223-295)||(48070319-48070391)
chr1 (223-284)||(1804599-1804660)
chr1 (179-307)||(9410892-9411024)
chr1 (228-284)||(26755800-26755857)
chr1 (224-284)||(51596624-51596684)
chr1 (223-304)||(44441220-44441301)
[»] chr2 (4 HSPs)
chr2 (239-293)||(37742843-37742897)
chr2 (223-306)||(42141781-42141864)
chr2 (223-263)||(38766331-38766371)
chr2 (223-307)||(39958172-39958256)
[»] chr5 (2 HSPs)
chr5 (224-312)||(7196799-7196887)
chr5 (223-287)||(9976519-9976583)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 5105117 - 5104806
Alignment:
Q  7 gataatactcattttgtcttaaataatactcattatatcttaaattataagtcgttttagagnnnnnnnncttatttcagattataagttgtttcacaat 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||| ||| | ||||||||||||||||||||    
T  5105117 gataatactcattttgtcttaaataatacccattatatcttaaattataagtcgttttagagaaaaaaaacttgttttaaattataagttgtttcacaat 5105018  T
Q  107 atcaataaagcattaaatactatttttcttaatataacttcaatttacaactatttcttacnnnnnnnnnnaaattctttaatttatctttcttatatca 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||    
T  5105017 atcaatgaagcattaaatactatttttcttaatataacttcaatttacaactatttcttactttttttttcaa-ttctttaatttatctttcttatatca 5104919  T
Q  207 ttaagatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 306  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5104918 ttaagataattttgtaaaa-tgacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcgtataattt 5104820  T
Q  307 gagatgttgagagt 320  Q
    ||||||||||||||    
T  5104819 gagatgttgagagt 5104806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 5104187 - 5104110
Alignment:
Q  400 agaatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtggacaagggtgttccaat 477  Q
    ||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||    
T  5104187 agaatttaccggtatccatctggtttctcaggccaataccaagtgaattctcctgaaggtggacaacggtgttccaat 5104110  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 5110762 - 5110693
Alignment:
Q  402 aatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtggacaagggtgt 471  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||    
T  5110762 aatttaccggtatccctctggtttctcaggccaatattcagtaaattctccagaaggtggacaagggtgt 5110693  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 2344889 - 2344793
Alignment:
Q  215 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 312  Q
    ||||||||||| || |||||||||| ||||| ||||||||||||| ||| | ||  |||||||||| ||| |||||||||||||||||||||||||||    
T  2344889 attttgtaaaacta-cttataatttctctttttcatacaacattatttacacttcttaatttgtgtaaaatgatcaaaacatcatataatttgagatg 2344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 48021537 - 48021496
Alignment:
Q  271 taatttgtgtgaaaagatcaaaacatcatataatttgagatg 312  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  48021537 taatttgtgtgaaatgatcaaaatatcatataatttaagatg 48021496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 24161820 - 24161904
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    |||| |||| ||||||| |||| |||| |||| |||| ||||||||  ||||  |||||||| || |||||||||||| ||||||    
T  24161820 aaaacaactcataatttctcttcctcacacaatattaattatatttcttaatacgtgtgaaatgaccaaaacatcatacaatttg 24161904  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 32243293 - 32243425
Alignment:
Q  179 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 273  Q
    |||||||||||||||||||| | || ||||||     ||| ||||||||||| ||  ||||||||| ||||| ||||||||||||| ||| ||||| |||    
T  32243293 aattctttaatttatctttcatgtaccattaatgaaggataattttgtaaaattat-ttataatttctctttttcatacaacattaattacattttttaa 32243391  T
Q  274 tttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||| ||| ||  ||||| ||||||||||||    
T  32243392 tttgtgtaaaatgactaaaacgtcatataatttg 32243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 10101404 - 10101330
Alignment:
Q  233 ataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||| |||||||||||||| ||||||||||  |  |||||||||| ||| |||||| || ||||||||||||    
T  10101404 ataatttctctttctcatacaatattagttatacatcttaatttgtgtaaaatgatcaatacgtcatataatttg 10101330  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 229138 - 229053
Alignment:
Q  215 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcata 300  Q
    ||||| || |||| |||| |||||| ||||| |||||| |||||| ||| | ||  |||||||| ||||| |||||||||||||||    
T  229138 attttttataaatgacttgtaatttctctttttcatacgacattaattacagttcttaatttgtatgaaatgatcaaaacatcata 229053  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 27116736 - 27116819
Alignment:
Q  224 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    |||| |||||||||||||||||  |||||||||||| ||| ||||  |||||||||||||| |||| ||| |||||||| ||||    
T  27116736 aaattacttataatttatcttttccatacaacattaattacatttcttaatttgtgtgaaatgatcgaaatatcatatagtttg 27116819  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 16736528 - 16736441
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgaga 310  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| ||||||||||||||| |||||||||    
T  16736528 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgatcaaaacatcatacaatttgaga 16736441  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 11587854 - 11587770
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    |||| |||| ||||| | |||||| ||||||| |||| ||||||||  |||| ||||||||| | ||||||| ||||||||||||    
T  11587854 aaaacaactcataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaatgctcaaaacgtcatataatttg 11587770  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 37505093 - 37505225
Alignment:
Q  179 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 273  Q
    |||||||| |||||||||||| |||||||| |     ||| |||||||||||  |||| ||||| | |||||| || |||| |||| ||| ||||| |||    
T  37505093 aattctttcatttatctttctcatatcatttattaaggataattttgtaaaac-aactcataatatctctttcccacacaatattaattacattttttaa 37505191  T
Q  274 tttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    | ||||||||| |  |||||| ||||||||||||    
T  37505192 tatgtgtgaaatgcccaaaacgtcatataatttg 37505225  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 1501181 - 1501275
Alignment:
Q  178 aaattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattt 268  Q
    |||||||||||||||| ||||| |||||||||      ||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||    
T  1501181 aaattctttaatttatttttctcatatcattattgaatgatgattttgtaaaa-taacttataatttttctttctcatacaaaattaattacattt 1501275  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 4540595 - 4540678
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 306  Q
    ||||| ||||||||||| | ||||||||||| ||||| ||| ||||  || ||||||||||| ||  |||||||||||||||||    
T  4540595 aaaattacttataatttctttttctcatacatcattaattacatttcttactttgtgtgaaatgacgaaaacatcatataattt 4540678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 48583987 - 48583895
Alignment:
Q  215 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||||||||||||| ||||| |||||||| ||||||| |||| ||| ||||  |||  ||||||||| |  |||||| ||||| ||||||    
T  48583987 attttgtaaaaataactcataatatatctttcccatacaatattaattacatttcttaacatgtgtgaaatggccaaaacgtcatacaatttg 48583895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 32100225 - 32100093
Alignment:
Q  179 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 273  Q
    |||||||| |||||||||||  |||||||| |     ||| |||||||||||  |||| ||||| | ||||||||| |||| |||| ||| ||||  |||    
T  32100225 aattctttcatttatctttcccatatcatttattaaggataattttgtaaaac-aactcataatatctctttctcacacaatattaattacatttcttaa 32100127  T
Q  274 tttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||||||| | ||||||| ||||| ||||||    
T  32100126 tttgtgtgaaatgctcaaaacgtcatacaatttg 32100093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 22233444 - 22233371
Alignment:
Q  234 taatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||||||||  |||||||||||| |||  |||| |||||||||||||| ||||||||| || |||||||||    
T  22233444 taatttatcttttccatacaacattaattaagttttttaatttgtgtgaaatgatcaaaacgtcgtataatttg 22233371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 50174498 - 50174630
Alignment:
Q  179 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 273  Q
    |||| ||||||||||||||| |||| | ||||     ||| ||||||||||| | ||||||||||| |||||| ||| |||||||| ||| | ||  |||    
T  50174498 aattatttaatttatctttcctataccgttaatgaaggataattttgtaaaa-tgacttataatttctctttcccatgcaacattaattacacttcttaa 50174596  T
Q  274 tttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||||||| ||||||||  || |||||||||    
T  50174597 tttgtgtgaaatgatcaaaatgtcgtataatttg 50174630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 37788061 - 37788145
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    ||||||||| ||||||| |||||| || |||| |||| ||||||||  ||||  |||||||| |  |||||| ||||||||||||    
T  37788061 aaaataactcataatttctctttcccacacaatattaattatatttcttaatacgtgtgaaatggccaaaacgtcatataatttg 37788145  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 48070391 - 48070319
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaaca 295  Q
    ||||||||||||||| | |||||| ||||||| |||  ||||||||  |||||||||||||| ||||||||||    
T  48070391 aaaataacttataatctttctttcccatacaaaatttattatatttattaatttgtgtgaaatgatcaaaaca 48070319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 1804599 - 1804660
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 284  Q
    ||||| ||||||||||| |||||||||| |||||||| ||| ||||| || |||||||||||    
T  1804599 aaaattacttataatttctctttctcatgcaacattaattacattttttagtttgtgtgaaa 1804660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 9411024 - 9410892
Alignment:
Q  179 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 273  Q
    |||||||| ||||||||||| ||||||||| |     ||  ||||||||||| ||||||||||| |||||||| || |||| |||| || |||||| |||    
T  9411024 aattctttcatttatctttcctatatcatttattaaggacaattttgtaaaa-taacttataatatatctttcccaaacaatattaattttattttttaa 9410926  T
Q  274 tttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    | ||||||||| |  |||||| || |||||||||    
T  9410925 tatgtgtgaaatgtccaaaacgtcgtataatttg 9410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 26755800 - 26755857
Alignment:
Q  228 aacttataatttatctttctcatacaacattagttatattttc-taatttgtgtgaaa 284  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  26755800 aactgataatttctctttttcatacaacattagttatcttttcttaatttgtgtgaaa 26755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 51596684 - 51596624
Alignment:
Q  224 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 284  Q
    |||||||| |||||||||| || | |||||| |||| ||||||||| ||||||||||||||    
T  51596684 aaataactcataatttatcatttttatacaatattaattatattttataatttgtgtgaaa 51596624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 44441301 - 44441220
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataat 304  Q
    ||||| || |||||||||||||||| ||| || |||| ||||||||| |||| | ||| |||| |||||||| || ||||||    
T  44441301 aaaatcacatataatttatctttctaatataatattaattatattttttaatatatgtaaaaatatcaaaacgtcttataat 44441220  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 37742843 - 37742897
Alignment:
Q  239 tatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaa 293  Q
    |||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||||    
T  37742843 tatctttctcatacaaaattaattacattttctaatatgtgtgaaatgatcaaaa 37742897  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 42141864 - 42141781
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 306  Q
    ||||| |||||||||||||||||  ||||||| |||| ||| | ||  |||||||||| ||| |||||| || |||||||||||    
T  42141864 aaaatgacttataatttatcttttccatacaatattaattacacttcttaatttgtgtaaaatgatcaatacgtcatataattt 42141781  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 38766331 - 38766371
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagtta 263  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  38766331 aaaataacttataatttatttttctcaaacaaaattagtta 38766371  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 39958256 - 39958172
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 307  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| || |||||| ||||||||||||    
T  39958256 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgaccaaaacgtcatataatttg 39958172  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 7196799 - 7196887
Alignment:
Q  224 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 312  Q
    |||||||| ||||||| ||||| |||||||| |||| ||| ||||  |||||||||||||| | ||||||   | ||||||||||||||    
T  7196799 aaataactcataatttttctttatcatacaaaattaattacatttcttaatttgtgtgaaatggtcaaaatgacttataatttgagatg 7196887  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 9976519 - 9976583
Alignment:
Q  223 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaaga 287  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| | ||| ||||| || ||||||||    
T  9976519 aaaattacttataatttatctttcttatacaacattaattacactttttaattcgtatgaaaaga 9976583  T

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