View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13994_high_1 (Length: 547)

Name: NF13994_high_1
Description: NF13994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13994_high_1
NF13994_high_1
[»] chr2 (2 HSPs)
chr2 (269-431)||(10983066-10983228)
chr2 (384-431)||(3081203-3081251)
[»] chr6 (3 HSPs)
chr6 (430-532)||(1827538-1827638)
chr6 (482-524)||(1832348-1832390)
chr6 (482-531)||(1836132-1836181)
[»] chr3 (1 HSPs)
chr3 (364-433)||(33365923-33365993)
[»] chr1 (4 HSPs)
chr1 (364-432)||(49195465-49195534)
chr1 (384-433)||(40908314-40908364)
chr1 (364-432)||(12606643-12606712)
chr1 (384-431)||(46566569-46566617)
[»] chr4 (2 HSPs)
chr4 (364-431)||(31525509-31525577)
chr4 (384-431)||(23538245-23538293)
[»] chr5 (2 HSPs)
chr5 (356-431)||(12870155-12870232)
chr5 (384-431)||(43469632-43469680)
[»] chr7 (4 HSPs)
chr7 (117-162)||(45031858-45031903)
chr7 (384-431)||(10646135-10646183)
chr7 (482-532)||(46382938-46382988)
chr7 (384-427)||(4658704-4658748)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 269 - 431
Target Start/End: Original strand, 10983066 - 10983228
Alignment:
Q  269 tgattggttgtttgatgtacatgaaaggtcacatttaatgaggctaatatgtagtgggtggttagtagataagccttgcaataaatgacggattaggagg 368  Q
    ||||||||||  ||||||||||||||||||||| | |||| | | || | | ||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  10983066 tgattggttgaatgatgtacatgaaaggtcacaataaatgcgcccaagaggaagtgggtggttggcagataagccttgcaattaatgacgaattaggagg 10983165  T
Q  369 gaaaaacaggattgtttagggcaaactgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10983166 gaaaatcaggattgattagggcaaactgccagctcatcaagtctggcttttataataaaggat 10983228  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 3081251 - 3081203
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  3081251 ttagggcaacactgccagctcatcaagtctggctttaatagtaaaggat 3081203  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 430 - 532
Target Start/End: Complemental strand, 1827638 - 1827538
Alignment:
Q  430 atatttttggaattgcaaaacacgttcgaaacaaaacatgttacagaaggccggaccaaaccatagaacactgtctcttttgtaggaccaaagaatacta 529  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  1827638 atatttttggaattgcaaaacacgttcagaacaaaacatgttacacaaggccggaccaaaccatagaacac--tctcttttgtaggaccaaagaatacta 1827541  T
Q  530 att 532  Q
    |||    
T  1827540 att 1827538  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 1832390 - 1832348
Alignment:
Q  482 ggaccaaaccatagaacactgtctcttttgtaggaccaaagaa 524  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  1832390 ggaccaaaccatagaccactgtctcttttgtaagaccaaagaa 1832348  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 531
Target Start/End: Complemental strand, 1836181 - 1836132
Alignment:
Q  482 ggaccaaaccatagaacactgtctcttttgtaggaccaaagaatactaat 531  Q
    ||||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  1836181 ggaccaaaccatagaccactgtctcttttgttagaccaaagtatactaat 1836132  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 433
Target Start/End: Complemental strand, 33365993 - 33365923
Alignment:
Q  364 ggagggaaaaacaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggatat 433  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33365993 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatat 33365923  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 49195465 - 49195534
Alignment:
Q  364 ggagggaaaaacaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggata 432  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49195465 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggata 49195534  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 40908364 - 40908314
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggatat 433  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  40908364 ttagggcaacactgccagctcatcaagtctggcttttatagtaaaggatat 40908314  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 12606643 - 12606712
Alignment:
Q  364 ggagggaaaaacaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggata 432  Q
    ||||||||||  |||| || ||||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  12606643 ggagggaaaataaggagtgattagggcaacactgccagcacatcaagtctggcttttatagtaaaggata 12606712  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 46566617 - 46566569
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  46566617 ttagggcaacactgccagctcatcaaatctggcttttataataaaggat 46566569  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 31525509 - 31525577
Alignment:
Q  364 ggagggaaaaacaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31525509 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 31525577  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 23538245 - 23538293
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||||||| ||||| ||||||||||||||| |||| ||||||||||||    
T  23538245 ttagggcaacactgctagctcatcaagtctgactttaataataaaggat 23538293  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 12870232 - 12870155
Alignment:
Q  356 acggattagg-agggaaaaacaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    |||||||||| |||||||||||| | || ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12870232 acggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggat 12870155  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 43469632 - 43469680
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43469632 ttagggcaacactgccagctcatcaagtctggcttttataataaaggat 43469680  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 45031858 - 45031903
Alignment:
Q  117 tattttactgatggtaagattcacacctctctaattctgtatctta 162  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  45031858 tattttactgatggtaagatttacacctctctaatcctgtatctta 45031903  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 10646135 - 10646183
Alignment:
Q  384 ttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 431  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  10646135 ttagggcaacactgccagctcatcaagtctggcttttagaataaaggat 10646183  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 532
Target Start/End: Original strand, 46382938 - 46382988
Alignment:
Q  482 ggaccaaaccatagaacactgtctcttttgtaggaccaaagaatactaatt 532  Q
    ||||||||||||||| |||||||||||||||  |||||||| |||| ||||    
T  46382938 ggaccaaaccatagaccactgtctcttttgttagaccaaagtataccaatt 46382988  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 4658704 - 4658748
Alignment:
Q  384 ttagggcaaac-tgccagctcatcaagtctggcttttataataaa 427  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||    
T  4658704 ttagggcaaacatgctagctcatcaagtctagcttttataataaa 4658748  T

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