View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13994_high_3 (Length: 397)
Name: NF13994_high_3
Description: NF13994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13994_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 39394780 - 39395155
Alignment:
| Q |
1 |
tgaaggcggaaaatttaattgaacaattgaatatgcttaagagcgaattgaaatcagcaacaaaagcggaagagaatagcaaaaaagcaatggacgattt |
100 |
Q |
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| T |
39394780 |
tgaaggcggaaaatttaattgaacaattgaatatgcttaagagcgaattgaaatcagcaacaaaagcggaagagaatagcaagaaagcaatggacgattt |
39394879 |
T |
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| Q |
101 |
agcattcgcgctaaaagaagtggcaacagaagctaaccaagtgaaaacaaaactaaccttaagtcaagttgaactagaacacacaaaaggcgatgctgag |
200 |
Q |
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| T |
39394880 |
agcattcgcactaaaagaagtggcaacagaagctaaccaagtgaaaacaaaactaaccttaagtcaagttgaactagaacacacaaaaggcgacgctgag |
39394979 |
T |
|
| Q |
201 |
cgttggaaaacgatgctagaaagcacagaagagaagtacaaagagcatctagacgcgacaagaaaagaagctgagaggttcaaaaacaccgcggagagat |
300 |
Q |
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| T |
39394980 |
cgttggaaaacgatgttagaaagcacagaagagaagtacaaagagcttctagacgcgacaagaaaagaagctgagaggttcaaaaacaccgcggagagat |
39395079 |
T |
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| Q |
301 |
tgagattagaagctgaagaatcacttttagcatggaatggaaaagaaactgagtttgttacttgtattaaaagagc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395080 |
tgagattagaagctgaagaatcacttttagcatggaatggaaaagaaactgagtttgttacttgtattaaaagagc |
39395155 |
T |
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