View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13994_low_2 (Length: 490)

Name: NF13994_low_2
Description: NF13994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13994_low_2
NF13994_low_2
[»] chr4 (18 HSPs)
chr4 (16-484)||(46796907-46797397)
chr4 (377-452)||(49619153-49619228)
chr4 (261-335)||(25896848-25896922)
chr4 (396-477)||(51555960-51556041)
chr4 (261-317)||(19429402-19429458)
chr4 (261-305)||(23983915-23983959)
chr4 (261-305)||(23990610-23990654)
chr4 (417-476)||(43932330-43932389)
chr4 (391-477)||(21157664-21157750)
chr4 (391-477)||(22684604-22684690)
chr4 (391-465)||(24443946-24444020)
chr4 (396-477)||(485977-486058)
chr4 (408-461)||(2980576-2980629)
chr4 (396-449)||(4471095-4471148)
chr4 (396-449)||(30024624-30024677)
chr4 (413-458)||(52504464-52504509)
chr4 (263-303)||(1313233-1313273)
chr4 (251-335)||(10172126-10172210)
[»] chr2 (12 HSPs)
chr2 (109-192)||(23395000-23395083)
chr2 (391-478)||(11393454-11393541)
chr2 (391-478)||(11410115-11410202)
chr2 (391-474)||(33197327-33197410)
chr2 (396-462)||(44606181-44606247)
chr2 (393-454)||(10190198-10190259)
chr2 (411-475)||(29318770-29318834)
chr2 (312-363)||(27237876-27237927)
chr2 (261-304)||(39622046-39622089)
chr2 (261-363)||(8820224-8820326)
chr2 (391-456)||(35329907-35329972)
chr2 (396-476)||(37845445-37845525)
[»] chr8 (11 HSPs)
chr8 (391-477)||(39392749-39392835)
chr8 (391-477)||(10727093-10727179)
chr8 (283-366)||(11569411-11569494)
chr8 (391-465)||(14482110-14482184)
chr8 (251-333)||(40356994-40357076)
chr8 (391-465)||(35869745-35869819)
chr8 (396-449)||(7026655-7026708)
chr8 (251-304)||(14926904-14926957)
chr8 (399-464)||(28769435-28769500)
chr8 (264-321)||(30013296-30013353)
chr8 (261-293)||(1113216-1113248)
[»] chr5 (10 HSPs)
chr5 (391-465)||(20982223-20982297)
chr5 (396-477)||(26516194-26516275)
chr5 (396-477)||(6733985-6734066)
chr5 (261-360)||(2568697-2568796)
chr5 (261-363)||(32172689-32172791)
chr5 (391-477)||(35135750-35135836)
chr5 (397-450)||(10391276-10391329)
chr5 (398-455)||(11684341-11684398)
chr5 (262-363)||(38728438-38728539)
chr5 (251-343)||(14980565-14980657)
[»] chr3 (15 HSPs)
chr3 (394-456)||(25964359-25964421)
chr3 (396-465)||(36200026-36200095)
chr3 (374-465)||(13413859-13413951)
chr3 (261-304)||(36189724-36189767)
chr3 (384-474)||(41028932-41029022)
chr3 (417-474)||(28842971-28843028)
chr3 (265-361)||(30923835-30923930)
chr3 (283-363)||(52323848-52323928)
chr3 (374-449)||(16790427-16790502)
chr3 (396-458)||(36445647-36445709)
chr3 (425-467)||(51206626-51206668)
chr3 (435-476)||(48933716-48933757)
chr3 (261-317)||(12985295-12985351)
chr3 (283-327)||(42530332-42530376)
chr3 (251-359)||(45541611-45541719)
[»] chr1 (13 HSPs)
chr1 (391-477)||(23895232-23895318)
chr1 (401-476)||(13037761-13037836)
chr1 (261-304)||(14737658-14737701)
chr1 (261-304)||(31517672-31517715)
chr1 (390-456)||(870962-871028)
chr1 (418-476)||(6659410-6659468)
chr1 (374-456)||(23373361-23373443)
chr1 (374-456)||(40357957-40358039)
chr1 (391-451)||(2773692-2773752)
chr1 (391-463)||(7274027-7274099)
chr1 (261-345)||(28837285-28837368)
chr1 (397-465)||(30847869-30847937)
chr1 (396-476)||(44236624-44236704)
[»] chr7 (11 HSPs)
chr7 (398-477)||(5628661-5628740)
chr7 (391-433)||(1423086-1423128)
chr7 (261-363)||(48157052-48157154)
chr7 (379-447)||(24973870-24973938)
chr7 (397-476)||(26935644-26935723)
chr7 (391-478)||(49060435-49060522)
chr7 (439-477)||(28850522-28850560)
chr7 (261-335)||(39542232-39542306)
chr7 (400-477)||(22388001-22388078)
chr7 (439-476)||(39566324-39566361)
chr7 (396-456)||(5373142-5373202)
[»] chr6 (14 HSPs)
chr6 (261-363)||(2455846-2455948)
chr6 (391-458)||(22742281-22742348)
chr6 (391-478)||(29274317-29274404)
chr6 (391-465)||(2514610-2514684)
chr6 (391-477)||(10452448-10452534)
chr6 (391-477)||(21919970-21920056)
chr6 (379-449)||(21959652-21959722)
chr6 (408-465)||(9165331-9165387)
chr6 (251-300)||(12111066-12111115)
chr6 (396-448)||(1810393-1810445)
chr6 (391-467)||(4248864-4248940)
chr6 (283-363)||(32171337-32171417)
chr6 (261-305)||(33080510-33080554)
chr6 (401-465)||(33259724-33259788)
[»] scaffold0590 (1 HSPs)
scaffold0590 (391-477)||(1162-1248)
[»] scaffold0275 (1 HSPs)
scaffold0275 (391-477)||(2727-2813)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 46797397 - 46796907
Alignment:
Q  16 atgggagtagagagtgctgcgtcttctagctccaattcatggtcacagaatgatgaagatgataacagtagcaaaaacaacagcagtattgtggtgttga 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46797397 atgggagtagatagtgctgcgtcttctagctccaattcatggtcacataatgatgaagatgataacagtagcaaaaacaacagcagtattgtggtgttga 46797298  T
Q  116 atgtctacgatcttacccctattaataattacatgtattggtttggatttggaatctttcactccggcattgaaggtactttccctttctttctttgttt 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46797297 atgtctatgatcttacccctattaataattacatgtattggtttggatttggaatctttcactccggcattgaaggtactttccctttctttctttgttt 46797198  T
Q  216 caacttgttgatctgatctgttaagcnnnnnnnnattggaatgagttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagctta 315  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46797197 caacttgttgatctgatctgttaagctttttttgattggaatgagttatttgagcttatttacttgtataagcacttgtgagactgtttatgaaagctta 46797098  T
Q  316 ttgaaatagcttgtgacatgcacataagctctttttagcttatttccaaaacataagctagct----------------------tatggaaacatattg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||    
T  46797097 ttgaaatagcttgtgacatgcacataagctctttttagcttatttccaaaacataagctagcttatgaaaacaacttataacttatatggaaacatattg 46796998  T
Q  394 aatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaagcacttat 484  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46796997 aatttattttatcgtttgttatgaaaatagcttatgcataagaacttatatgataagcacttatgttataagtgattaattaagcacttat 46796907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 452
Target Start/End: Original strand, 49619153 - 49619228
Alignment:
Q  377 cttatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagca 452  Q
    ||||||||||||| ||| |||||||| ||| ||||||||  ||||||| |||||||| | ||||||||||||||||    
T  49619153 cttatggaaacattttgcatttatttgatcttttgttatacaaatagcctatgcataagcacttatatgataagca 49619228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 25896922 - 25896848
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatg 335  Q
    ||||||||| |||| |||| | || |||||||| ||||||||||| || ||||||| |||||||||| |||||||    
T  25896922 ttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttatgacatg 25896848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 51555960 - 51556041
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||| |||||||| | |||||||||| |||| | |||||||||||||    |||||||||||||| || ||||||    
T  51555960 tttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatgttataagtgctttattaag 51556041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 19429402 - 19429458
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttatt 317  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||  || ||||||||    
T  19429402 ttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttatt 19429458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 23983915 - 23983959
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttta 305  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||    
T  23983915 ttatttgagcttatctacttgtataggcacttgcgaaactgttta 23983959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 23990610 - 23990654
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttta 305  Q
    |||||||||||||| || |||||||||||||||||| ||||||||    
T  23990610 ttatttgagcttatctatttgtataagcacttgcgaaactgttta 23990654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 43932389 - 43932330
Alignment:
Q  417 aaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    ||||||| |||| |||| | |||| |||||||| ||||||||||||||||| ||||||||    
T  43932389 aaaatagtttatacataagcacttgtatgataaacacttatgttataagtgcttaattaa 43932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 21157750 - 21157664
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| |||| |||||  |||||||| ||||||||| || |||| | ||||||||||||| ||||| || || ||||| |||||||||    
T  21157750 ttgactttagtttatactttgttatcaaaatagctgatacataagcacttatatgataaacacttctgatacaagtgcttaattaag 21157664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 22684604 - 22684690
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||| ||||||||||  ||||||||||| || | | | ||||||||||||| | |||| ||||||  ||||||||||    
T  22684604 ttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagcaattaattaag 22684690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 24444020 - 24443946
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||||||||||||||  |||||| |  |||| |||||| |||| ||||||||||||||||  |||||| ||||||    
T  24444020 ttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataag 24443946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 486058 - 485977
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||| |||||| |  ||||||| ||| |||| | |||| |||||||||| |||||| |||||| | |||||||||    
T  486058 tttattttatcttttgttttagaaatagcatatacataagcacttttatgataagcgcttatgctataagcgcttaattaag 485977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 2980576 - 2980629
Alignment:
Q  408 tttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgtta 461  Q
    ||||||||  ||||||||||| |||| | ||||||||||||| |||||||||||    
T  2980576 tttgttatagaaatagcttatacataagcacttatatgataaacacttatgtta 2980629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 4471148 - 4471095
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataa 449  Q
    ||||||||||| |||||||| ||||||| ||||||||| | |||||||| ||||    
T  4471148 tttattttatcttttgttataaaaatagtttatgcataagcacttatataataa 4471095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 30024677 - 30024624
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataa 449  Q
    ||||||||||| ||||||||  ||||| |||||||||| | |||||||||||||    
T  30024677 tttattttatcttttgttatagaaataacttatgcataagtacttatatgataa 30024624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 52504464 - 52504509
Alignment:
Q  413 tatgaaaatagcttatgcataggaacttatatgataagcacttatg 458  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||||    
T  52504464 tatgaaaatagtttatgcataagaacttatatgataaacgcttatg 52504509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 1313273 - 1313233
Alignment:
Q  263 atttgagcttatttacttgtataagcacttgcgagactgtt 303  Q
    |||||||||||| ||| |||||||||||||| |||||||||    
T  1313273 atttgagcttatctacatgtataagcacttgtgagactgtt 1313233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 10172210 - 10172126
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatg 335  Q
    ||||| ||| |||||||||||||| ||  || ||||||||||| || |||||||   | ||||||| |||| |||||||||||||    
T  10172210 ttggattgatttatttgagcttatctatatgcataagcacttgtgaaactgtttgatatagcttatggaaacagcttgtgacatg 10172126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 23395000 - 23395083
Alignment:
Q  109 gtgttgaatgtctacgatcttacccctattaataattacatgtattggtttggatttggaatctttcactccggcattgaaggt 192  Q
    ||||||||||| || ||||| || ||| ||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||    
T  23395000 gtgttgaatgtgtatgatctcacacctcttaataattacttttattggtttggatttggaatctttcactctggcattcaaggt 23395083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 11393454 - 11393541
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaagc 478  Q
    ||||||||||| |||| |||| |||  |||||||||||  ||| | ||||||||||||| ||||| || |||||||| ||||||||||    
T  11393454 ttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagc 11393541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 11410115 - 11410202
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaagc 478  Q
    ||||||||||| |||| |||| |||  |||||||||||  ||| | ||||||||||||| ||||| || |||||||| ||||||||||    
T  11410115 ttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagc 11410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 474
Target Start/End: Original strand, 33197327 - 33197410
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaatt 474  Q
    |||| |||||| |||| ||||||||  |||||||||||  ||| | |||||||||||||||  |||||||||||||| ||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaatt 33197410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 44606181 - 44606247
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttat 462  Q
    ||||||||||| ||||||||||||||||||||| ||||   |||||||| |||||| ||||| ||||    
T  44606181 tttattttatcttttgttatgaaaatagcttatacataaacacttatataataagcgcttatcttat 44606247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 10190259 - 10190198
Alignment:
Q  393 gaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcact 454  Q
    |||||||||||||| |||||||| ||||||| |||| |||| | ||||||||||||| ||||    
T  10190259 gaatttattttatcctttgttataaaaatagtttatacataagcacttatatgataaccact 10190198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 29318834 - 29318770
Alignment:
Q  411 gttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaatta 475  Q
    ||||| ||| ||||||||| ||| | |||||||||||||||||||||||| |||| | |||||||    
T  29318834 gttataaaagtagcttatgtataagcacttatatgataagcacttatgttttaagcgcttaatta 29318770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 27237876 - 27237927
Alignment:
Q  312 cttattgaaatagcttgtgacatgcacataagctctttttagcttatttcca 363  Q
    ||||| |||| ||||| ||||||| ||||||||| |||||||||||||||||    
T  27237876 cttatagaaacagcttatgacatgtacataagctgtttttagcttatttcca 27237927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 39622089 - 39622046
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttt 304  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  39622089 ttatttgaacttatctacttgtataagcacttgcgacactgttt 39622046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 8820224 - 8820326
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttattt 360  Q
    |||||||||  ||| ||||  ||||||||||| |||||||| ||| || | ||||| |||| ||||| |||||||  || ||||| |||| |||||||||    
T  8820224 ttatttgagtatatctactaatataagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcagcttattt 8820323  T
Q  361 cca 363  Q
    |||    
T  8820324 cca 8820326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 35329907 - 35329972
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    |||| ||||||||||| | ||||||| |||||| |||||||||   ||||||||||||| ||||||    
T  35329907 ttgactttattttatcttatgttatggaaatagtttatgcataaacacttatatgataaacactta 35329972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 476
Target Start/End: Original strand, 37845445 - 37845525
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    ||||||||||  ||| |||| |||||||| |||  ||| ||||||||||||||| || ||| | |||||||| ||||||||    
T  37845445 tttattttatattttattataaaaatagcatataaataagaacttatatgataaacatttacgctataagtgtttaattaa 37845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 39392749 - 39392835
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||||| ||||||||  |||||| |||| |||||  |||||||||||||||||||||| ||||| || |||||||||    
T  39392749 ttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaag 39392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 10727179 - 10727093
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||||||||||| ||| |||| |||  |||||||||||||||| | ||||||||||| | |||||||| ||||| || |||||||||    
T  10727179 ttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaag 10727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 11569411 - 11569494
Alignment:
Q  283 ataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttatttccaaaa 366  Q
    |||| |||||| ||||||||||| || ||||||| |||| ||||| ||||||| ||||||| | |||| ||||||||| |||||    
T  11569411 ataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaa 11569494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 14482184 - 14482110
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||| ||||||||||| ||||||||  |||||| |||| |||| | |||||||||||||||||| ||| ||||||    
T  14482184 ttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 40357076 - 40356994
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgaca 333  Q
    ||||| ||| ||||||||| |||| |||  ||||||||||||  |||| |||||||||  ||||||||||||||||| |||||    
T  40357076 ttggattgatttatttgagtttatctacaggtataagcacttcagagattgtttatgagggcttattgaaatagcttatgaca 40356994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 35869819 - 35869745
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||||||||||||||  |||||| |  |||| |||||| |||| ||||||||||||||||  |||||| ||||||    
T  35869819 ttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataag 35869745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 7026708 - 7026655
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataa 449  Q
    ||||||||||| |||||||| | | ||||||||||||| | |||||||||||||    
T  7026708 tttattttatcttttgttataacagtagcttatgcataagcacttatatgataa 7026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 14926904 - 14926957
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagactgttt 304  Q
    ||||| ||| |||||||| |||||||||| | ||||||||||| ||||||||||    
T  14926904 ttggattgacttatttgaacttatttactggcataagcacttgtgagactgttt 14926957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 28769435 - 28769500
Alignment:
Q  399 attttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataa 464  Q
    ||||||| |||||||||   |||||||||| |||| | | |||||||||||||||||||| |||||    
T  28769435 attttatagtttgttataggaatagcttatacataagcatttatatgataagcacttatgctataa 28769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 30013353 - 30013296
Alignment:
Q  264 tttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaa 321  Q
    |||||| ||||||||| | ||||||| ||| |||||||||| ||||||||||| ||||    
T  30013353 tttgagtttatttactggcataagcatttgtgagactgtttttgaaagcttatggaaa 30013296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 1113248 - 1113216
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttg 293  Q
    |||||||||||||| ||||||||||||||||||    
T  1113248 ttatttgagcttatctacttgtataagcacttg 1113216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 20982223 - 20982297
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||| ||||||||||| ||||||||  ||||||||||| |||| | |||||||||||||||||||||| ||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataag 20982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 26516275 - 26516194
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||| |||||| |  ||||||||||| |||| | ||||||||||||||| |||||| |||||| | |||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaag 26516194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 6733985 - 6734066
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||| || ||||| ||||||| |||||||||   ||||||||||||| ||||||| ||| ||| | |||||||||    
T  6733985 tttattttatctttcgttataaaaatagattatgcataaacacttatatgataatcacttatattagaagcgcttaattaag 6734066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 2568796 - 2568697
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttattt 360  Q
    |||||||||||||| |||| || |||||||||| |||||||||||  | | |||||  ||| ||||| ||||||   |||||| | ||||||||||||||    
T  2568796 ttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattt 2568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 32172791 - 32172689
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttattt 360  Q
    |||||||||||||| |||| | ||||||||||| ||||  ||||  || ||||||| |||| | ||| |||||||  |||||||  |||| |||||||||    
T  32172791 ttatttgagcttatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttattt 32172692  T
Q  361 cca 363  Q
    |||    
T  32172691 cca 32172689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 35135750 - 35135836
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||||| ||||||||  ||||| ||||| ||||   ||||||||| |||||||||||| ||| |||| | |||||||    
T  35135750 ttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttatgctatgagtgttgaattaag 35135836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Complemental strand, 10391329 - 10391276
Alignment:
Q  397 ttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataag 450  Q
    |||||||||| |||||||| |||||||||||| | || | ||||||||||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataag 10391276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 11684398 - 11684341
Alignment:
Q  398 tattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactt 455  Q
    ||||||||  |||||||| |||||||||||| |||  | |||||||||||||||||||    
T  11684398 tattttatattttgttataaaaatagcttatacattagcacttatatgataagcactt 11684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 363
Target Start/End: Complemental strand, 38728539 - 38728438
Alignment:
Q  262 tatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttatttc 361  Q
    ||||||||||||| || | |||||| ||| || | || |||||  || |||||||  ||||||||| |||||||| | |||||| |||| ||||||||||    
T  38728539 tatttgagcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttcagcttatttc 38728440  T
Q  362 ca 363  Q
    ||    
T  38728439 ca 38728438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 14980657 - 14980565
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataag 343  Q
    ||||||||| |||||||||||||| |||| | |||||||||   ||||||||||  || |||||||  ||||  ||| ||||||| |||||||    
T  14980657 ttggaatgacttatttgagcttatctactggcataagcactatagagactgtttgagagagcttataaaaatgacttatgacatgtacataag 14980565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 456
Target Start/End: Complemental strand, 25964421 - 25964359
Alignment:
Q  394 aatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    ||||||||||||| |||||||| |||||||||||| || | ||||||||||||||||||||||    
T  25964421 aatttattttatcttttgttataaaaatagcttatacaaaagaacttatatgataagcactta 25964359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 36200095 - 36200026
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    ||||||||||| |||||||   |||||||| || |||| ||||||||||||||||| |||||||||||||    
T  36200095 tttattttatcatttgttacataaatagctgatacataagaacttatatgataagctcttatgttataag 36200026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 465
Target Start/End: Complemental strand, 13413951 - 13413859
Alignment:
Q  374 tagcttatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcat-aggaacttatatgataagcacttatgttataag 465  Q
    ||||||||| |||||  || ||||||||||||   || ||||||||||||||||||||| || ||||||||||| || |||||||| ||||||    
T  13413951 tagcttatgaaaacagcttaaatttattttatttcttattatgaaaatagcttatgcataagtaacttatatgagaaacacttatgctataag 13413859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 36189767 - 36189724
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttt 304  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  36189767 ttatttgagcttatttactagtataagcacttgtgagactgttt 36189724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 41028932 - 41029022
Alignment:
Q  384 aaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaatt 474  Q
    ||||| ||||| |||||||| || ||||||||  ||||||||||| |||| | |||||||||||||||| ||| | |||||| ||| ||||    
T  41028932 aaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataagcatttaagctataagagataaatt 41029022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 28842971 - 28843028
Alignment:
Q  417 aaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaatt 474  Q
    |||||||||||| |||| | ||||||||||||||| |||||| |||||||| ||||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgcttatgatataagtgcttaatt 28843028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 30923835 - 30923930
Alignment:
Q  265 ttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttatttc 361  Q
    ||||||||||||| |  ||||| |||||| |||||||||||||| ||| ||| |||| ||||| |||||||   ||||||| |||| ||||||||||    
T  30923835 ttgagcttatttattgatataaacacttgtgagactgtttatgagagc-tatggaaacagcttatgacatgtctataagctgttttcagcttatttc 30923930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 52323848 - 52323928
Alignment:
Q  283 ataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttatttcca 363  Q
    |||||||||||| ||||||||| ||| ||||||||||||||  || ||||| |  |||||||| |||| | ||||||||||    
T  52323848 ataagcacttgcaagactgtttgtgagagcttattgaaataatttatgacacgtccataagctgttttcaacttatttcca 52323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 16790427 - 16790502
Alignment:
Q  374 tagcttatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataa 449  Q
    ||||||||| ||| |  |||| |||||||||||  ||||||| |||||||||||| |||| | |||||||||||||    
T  16790427 tagcttatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 36445709 - 36445647
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatg 458  Q
    |||||||| || ||||||||  ||||||||||| ||||  |||| ||||||||||||||||||    
T  36445709 tttattttctcttttgttatagaaatagcttatacataaaaactcatatgataagcacttatg 36445647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 51206626 - 51206668
Alignment:
Q  425 ttatgcataggaacttatatgataagcacttatgttataagtg 467  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  51206626 ttatgcataggtacttatatgataagcacttatgctatgagtg 51206668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 48933716 - 48933757
Alignment:
Q  435 gaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    ||||||||||||||  ||||||||||||||||| ||||||||    
T  48933716 gaacttatatgatagacacttatgttataagtgcttaattaa 48933757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 12985295 - 12985351
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttatt 317  Q
    ||||||||||||||  ||||| |||||||||| |||||||||||  || ||||||||    
T  12985295 ttatttgagcttatccacttgcataagcactttcgagactgtttgagagagcttatt 12985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 42530376 - 42530332
Alignment:
Q  283 ataagcacttgcgagactgtttatgaaagcttattgaaatagctt 327  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||||    
T  42530376 ataagcacttgtgagactgtttcagaaagcttatggaaatagctt 42530332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 45541719 - 45541611
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttt 350  Q
    ||||| ||| ||||||||||||||||| | |||||| ||||||  ||||||||||  | | |||||  ||| ||||| |||||||  |||||||| ||||    
T  45541719 ttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgtttt 45541620  T
Q  351 tagcttatt 359  Q
     || |||||    
T  45541619 caggttatt 45541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 23895318 - 23895232
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||||||||||||||| ||||||||  ||||||||||| ||||  |||||||||||||||  |||||| | |||||| |||||||||    
T  23895318 ttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataagggcttatgctttaagtgcttaattaag 23895232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 13037836 - 13037761
Alignment:
Q  401 tttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    |||||| ||||||||  ||||||||||| |||| | |||||||||| ||| ||||| |||||||| | ||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttatatgacaagaacttaagttataagcgtttaattaa 13037761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 14737658 - 14737701
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttt 304  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  14737658 ttatttgagcttatttactagaataagcacttgtgagactgttt 14737701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 31517672 - 31517715
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttt 304  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgagactgttt 31517715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 871028 - 870962
Alignment:
Q  390 attgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    ||||| || |||||||| |||||||| ||||||| |||| |||| | ||||||||||||||| ||||    
T  871028 attgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgataagcgctta 870962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 6659468 - 6659410
Alignment:
Q  418 aaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    |||||||||| ||||| ||||||||||||||||   |||||| ||||||| ||||||||    
T  6659468 aaatagcttaggcataagaacttatatgataagtgtttatgtaataagtgcttaattaa 6659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 456
Target Start/End: Original strand, 23373361 - 23373443
Alignment:
Q  374 tagcttatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    ||||||||| ||||| ||||| ||||||||||| |||| |||  |||||||| || | || | | ||||||||||||||||||    
T  23373361 tagcttatgaaaacagattgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgataagcactta 23373443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 456
Target Start/End: Original strand, 40357957 - 40358039
Alignment:
Q  374 tagcttatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    ||||| ||| |||||  |||| |||||||||||  |||||||  ||||||||||| |||||  |||||||| |||||||||||    
T  40357957 tagctcatgaaaacaatttgactttattttatccattgttatagaaatagcttatacatagtcacttatataataagcactta 40358039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 2773692 - 2773752
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagc 451  Q
    ||||| |||||||||| | ||||||| |||||||||||||||| | || || |||||||||    
T  2773692 ttgaaattattttatcttctgttatggaaatagcttatgcataagtacgtagatgataagc 2773752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 7274027 - 7274099
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttata 463  Q
    |||| ||||||| ||| |||||||| |||||| | ||| |||| | | |||||||||||||||||||| ||||    
T  7274027 ttgactttatttcatcttttgttataaaaataacatatacataagcatttatatgataagcacttatgctata 7274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 28837285 - 28837368
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagct 345  Q
    |||||||||||||| ||||   ||||||||||| ||||||||||| || | ||||   ||| ||||| |||||||||||||||||    
T  28837285 ttatttgagcttatctactgacataagcacttgagagactgtttaagaga-cttacgaaaacagcttatgacatgcacataagct 28837368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 30847869 - 30847937
Alignment:
Q  397 ttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    ||||| |||| ||||||||  |||| | ||||  ||| |||||||||||||||||| ||||||||||||    
T  30847869 ttattatatcttttgttatagaaatggtttattaatatgaacttatatgataagcatttatgttataag 30847937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 476
Target Start/End: Original strand, 44236624 - 44236704
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    ||||||||||| ||||||||   |||||||| | || |   |||||| ||||||||||||||| |||||||| ||||||||    
T  44236624 tttattttatcatttgttataggaatagcttctacacaaacacttatgtgataagcacttatgctataagtgcttaattaa 44236704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 5628661 - 5628740
Alignment:
Q  398 tattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||| |||||||| ||||||||||||||||| |  ||| |||||||||| ||| ||||||| ||| |||||||||    
T  5628661 tattttatcatttgttataaaaatagcttatgcataagcccttgtatgataagcccttctgttatatgtgcttaattaag 5628740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 1423128 - 1423086
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcata 433  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  1423128 ttgaatttattttatcttttgttatgaaaatagcttatacata 1423086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 48157052 - 48157154
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttattt 360  Q
    |||||||||||||||||||  | |||||| ||| ||||||||||  || ||||||| |||| | ||| || ||||  |||||||| |||| |||||||||    
T  48157052 ttatttgagcttatttactgatttaagcatttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttattt 48157151  T
Q  361 cca 363  Q
    |||    
T  48157152 cca 48157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 24973938 - 24973870
Alignment:
Q  379 tatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgat 447  Q
    ||||||||||  |||||||||||||||| ||||||||  ||||||||| | |||| | |||||||||||    
T  24973938 tatggaaacaatttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 476
Target Start/End: Original strand, 26935644 - 26935723
Alignment:
Q  397 ttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaa 476  Q
    |||||||||| |||||||| |||||||||||  || | | ||||||||||||| | |||||| |||||| | ||||||||    
T  26935644 ttattttatcatttgttataaaaatagcttacacaaaagcacttatatgataatctcttatggtataagcgcttaattaa 26935723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 478
Target Start/End: Complemental strand, 49060522 - 49060435
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaagc 478  Q
    |||| ||||||||||  ||||||||  ||||||||||| ||||   |||||||||||||||  ||||  |||||||| ||||||||||    
T  49060522 ttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtgcttaattaagc 49060435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 28850560 - 28850522
Alignment:
Q  439 ttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  28850560 ttatatgataagcacttatgttacaagtggttaattaag 28850522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 39542232 - 39542306
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatg 335  Q
    ||||||||| |||| |||| | ||||||||||||||||| ||||  || ||||||| |||||| ||| |||||||    
T  39542232 ttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttatggaaataacttatgacatg 39542306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 22388001 - 22388078
Alignment:
Q  400 ttttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||| ||||||||  ||||||||||| |||| | ||||| ||||||||   |||||||||||| | |||||||||    
T  22388001 ttttatcttttgttatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaag 22388078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 39566324 - 39566361
Alignment:
Q  439 ttatatgataagcacttatgttataagtgattaattaa 476  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  39566324 ttatttgataagcacttatgttataagtgcttaattaa 39566361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 5373202 - 5373142
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcactta 456  Q
    ||||||||||| ||||||||  ||||||| ||| |||| | ||||| ||||||||||||||    
T  5373202 tttattttatcttttgttatagaaatagcatatacataagcacttacatgataagcactta 5373142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 2455948 - 2455846
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttattt 360  Q
    |||||||||||||| |||  | |||||||||||||||| ||||||  | ||||||| |||| | ||| |||||||| ||||| || |||| | |||||||    
T  2455948 ttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttattt 2455849  T
Q  361 cca 363  Q
    |||    
T  2455848 cca 2455846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 22742348 - 22742281
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatg 458  Q
    |||| ||||||||||| ||||||||  |||||||||||  ||| ||||||||| ||||||| ||||||    
T  22742348 ttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataagcgcttatg 22742281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 29274317 - 29274404
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaagc 478  Q
    |||| ||||||||||| |||| |||  ||||||||||| |||| | | || ||||||||| |||| |||| |||||| ||||||||||    
T  29274317 ttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataagaacttgtgttgtaagtgcttaattaagc 29274404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 2514684 - 2514610
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||| ||||||||||| ||| ||||  ||||||||||| |||| | ||||| |||||||||| ||||| ||||||    
T  2514684 ttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 10452448 - 10452534
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||||  ||||||||  ||||||||||| |||| | ||| ||||||||  |||||||| |||||| | |||||||||    
T  10452448 ttgattttattttatattttgttatagaaatagcttatacataagcactgatatgatagccacttatgctataagagcttaattaag 10452534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 21920056 - 21919970
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    ||||||||||||| |  |||||||  ||||  | ||||||||| | |||||||||||||| ||||||| |||||| | |||||||||    
T  21920056 ttgaatttattttctattttgttacaaaaaatgtttatgcataagcacttatatgataagtacttatgctataagcgcttaattaag 21919970  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 21959722 - 21959652
Alignment:
Q  379 tatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataa 449  Q
    |||| ||||| ||||| ||||||||||| ||||||||| ||||||||||| | || | |||| ||||||||    
T  21959722 tatgcaaacaaattgactttattttatcttttgttatggaaatagcttatacttaagcacttctatgataa 21959652  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 9165387 - 9165331
Alignment:
Q  408 tttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||||||| |||||||||||| |||| | ||||||||| ||||||||||| |||||||    
T  9165387 tttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataag 9165331  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 12111115 - 12111066
Alignment:
Q  251 ttggaatgagttatttgagcttatttacttgtataagcacttgcgagact 300  Q
    ||||| ||| |||||||||||||| |||| | ||||||||||||||||||    
T  12111115 ttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 1810393 - 1810445
Alignment:
Q  396 tttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgata 448  Q
    ||||||||||| ||||||||  ||||||||| |||||| | ||||||||||||    
T  1810393 tttattttatcttttgttatagaaatagcttttgcataagcacttatatgata 1810445  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 4248940 - 4248864
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtg 467  Q
    |||| ||||||||||| ||||||||  |||||||||||  ||| | |||||||||| |||| |||||| || |||||    
T  4248940 ttgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttatgctagaagtg 4248864  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 32171337 - 32171417
Alignment:
Q  283 ataagcacttgcgagactgtttatgaaagcttattgaaatagcttgtgacatgcacataagctctttttagcttatttcca 363  Q
    ||||||||||||||||||||||  || |||||||  ||| ||||| ||||| |  || ||||| |||| ||||||||||||    
T  32171337 ataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttcca 32171417  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 33080510 - 33080554
Alignment:
Q  261 ttatttgagcttatttacttgtataagcacttgcgagactgttta 305  Q
    ||||||||||||||||||| | ||||||||||| |||| ||||||    
T  33080510 ttatttgagcttatttactggcataagcacttgtgagattgttta 33080554  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 33259788 - 33259724
Alignment:
Q  401 tttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataag 465  Q
    |||||| |||||||| |||||||||||| |||| | |||||||||  |||| ||||| |||||||    
T  33259788 tttatcttttgttataaaaatagcttatacataagcacttatatgtaaagctcttatcttataag 33259724  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 1162 - 1248
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||||| ||||||||  ||||||||||| |||| | ||||||||||||  |  ||||| |||||||  |||||||||    
T  1162 ttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaag 1248  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 2813 - 2727
Alignment:
Q  391 ttgaatttattttatcgtttgttatgaaaatagcttatgcataggaacttatatgataagcacttatgttataagtgattaattaag 477  Q
    |||| ||||||||||| ||||||||  ||||||||||| |||| | ||||||||||||  |  ||||| |||||||  |||||||||    
T  2813 ttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaag 2727  T

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