View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_high_11 (Length: 453)
Name: NF13995_high_11
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 10341564 - 10341978
Alignment:
| Q |
16 |
agaaccagagggttaacacaacaacaacaa---aaatgacactattgccttccattatactaggctgctagcaatagttcaaccttggtagtatagttat |
112 |
Q |
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| T |
10341564 |
agaaccagagggttaacacaacaacaacaacaaaaatgacactattgccttccattatactaggctgctagcaatagttcaaccttggtagtatagttat |
10341663 |
T |
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| Q |
113 |
agagacatttccgatctcaacaacatatgtgaatattttgaagcatagtgttatgaaagtttaacgaagatttgtctgcaactcatctcatgtctaccct |
212 |
Q |
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| T |
10341664 |
agagacatttccgatctcaacaacatatgtgaatattt--------------atgaaagtttaacgaagatttgtctgcaactcatcttatgtctaccct |
10341749 |
T |
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| Q |
213 |
gacactgttgagcttctgaaaccgaactcgccaaaacttctaaattcttatatgataataaaagtaagattatcacaatgcctacatctcgaagcaatat |
312 |
Q |
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| T |
10341750 |
gacactgttgagcttctgaaaccgaactcgccaaaacttctaaattcttatatgataataaaagtaagattatcacaatgcctacatctcgaagcaatat |
10341849 |
T |
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| Q |
313 |
ttctaagctacatcaaactcatttccattgtttagttagaaatttgaatattaaaccaaatttaattttcccatctccaccactgtaccttatgtcgaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
10341850 |
ttctaagctacatcaaactcatttccattgtttagttagaaatttgaatattaaaccaaatttaattttcccatctccaccactgtatcttgtgtcgaag |
10341949 |
T |
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| Q |
413 |
tatttctaagattcaatcttgttatttga |
441 |
Q |
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| T |
10341950 |
tatttctaagattcaatcttgttatttga |
10341978 |
T |
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