View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_high_18 (Length: 398)
Name: NF13995_high_18
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26374729 - 26374348
Alignment:
| Q |
1 |
cacggaatccaaagccataatacaacataaaatgttctttgtagcttattattcaaaagtaaaaaacaaaggagactattgaaatgaaaatcaatttatt |
100 |
Q |
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| T |
26374729 |
cacggaatccaaagccataatacaacataaaatgttctttgtagcttattattcaaaagtaaaaaacaaaggagattattgaaatgaaaatcaatttatt |
26374630 |
T |
|
| Q |
101 |
caaactaatgttgcatctcccacaactgctcaaacctcatgtctctctagtttggtttgattgaattggaaccagcgacagaatctgcacaaaataaaaa |
200 |
Q |
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| T |
26374629 |
caaactaatgttgcatctcccacaactgctcaaaccgcatgtctctctagtttggtttgattgaactggaaccagcgacagaatctgcacaaaataaata |
26374530 |
T |
|
| Q |
201 |
ggaaacatgttttaaaacgcaaaaatgtttgtaactgaattgtgtatatatcatatctcatttctgcactctaccatataacactaaaatttgatcaaga |
300 |
Q |
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| T |
26374529 |
ggaaacatgttttaaaacgcaaaaatgtttgtaactgaaatgtgtatatatcatatctcatttctgcactctaccatataacactaaaatttgatcaaga |
26374430 |
T |
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| Q |
301 |
aaacaatnnnnnnnnnnncattatttcttttacaaataattccaagtaaatgacataataggaggtaattttgtaattgaaatt |
384 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26374429 |
aaacaat--aaaaaaaaacattatttcttttacaaataattccaagtaaatgacataataggaggtaaatttgtaattgaaatt |
26374348 |
T |
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