View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_high_2 (Length: 687)

Name: NF13995_high_2
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_high_2
NF13995_high_2
[»] chr6 (18 HSPs)
chr6 (402-674)||(33215177-33215452)
chr6 (73-303)||(33216217-33216447)
chr6 (569-658)||(1127224-1127313)
chr6 (569-666)||(27822140-27822238)
chr6 (573-666)||(14238410-14238503)
chr6 (569-651)||(8049003-8049084)
chr6 (569-669)||(12882092-12882193)
chr6 (569-666)||(18727865-18727964)
chr6 (605-665)||(3536040-3536099)
chr6 (606-666)||(18727115-18727174)
chr6 (569-665)||(11658901-11658997)
chr6 (605-658)||(29340837-29340889)
chr6 (605-658)||(30052209-30052261)
chr6 (569-654)||(33615538-33615623)
chr6 (605-654)||(33693861-33693910)
chr6 (605-665)||(3542251-3542310)
chr6 (605-665)||(30049922-30049981)
chr6 (586-655)||(22873801-22873870)
[»] chr7 (29 HSPs)
chr7 (569-657)||(24840113-24840201)
chr7 (568-666)||(1369774-1369872)
chr7 (569-658)||(6451780-6451869)
chr7 (569-655)||(27142636-27142722)
chr7 (569-666)||(11000848-11000945)
chr7 (574-658)||(4888716-4888799)
chr7 (605-665)||(27309638-27309698)
chr7 (605-666)||(1883495-1883556)
chr7 (605-666)||(5934610-5934671)
chr7 (605-657)||(1753629-1753681)
chr7 (605-665)||(1874544-1874604)
chr7 (569-657)||(11228951-11229039)
chr7 (460-527)||(18790362-18790429)
chr7 (569-655)||(8916410-8916496)
chr7 (569-666)||(11228690-11228788)
chr7 (578-666)||(30217794-30217880)
chr7 (605-665)||(859180-859239)
chr7 (605-665)||(1217184-1217243)
chr7 (605-665)||(13882710-13882769)
chr7 (605-665)||(13886183-13886242)
chr7 (573-636)||(3778760-3778823)
chr7 (569-666)||(1365641-1365738)
chr7 (420-473)||(1785621-1785675)
chr7 (568-666)||(4133296-4133394)
chr7 (624-666)||(13466756-13466798)
chr7 (586-655)||(7803064-7803133)
chr7 (569-657)||(1786653-1786741)
chr7 (569-667)||(35814841-35814938)
chr7 (605-665)||(1220464-1220523)
[»] chr2 (23 HSPs)
chr2 (569-666)||(23457616-23457713)
chr2 (569-655)||(23456545-23456631)
chr2 (571-664)||(32161993-32162086)
chr2 (569-666)||(33051588-33051685)
chr2 (569-658)||(5171615-5171704)
chr2 (567-636)||(8294546-8294615)
chr2 (605-666)||(36647299-36647359)
chr2 (569-665)||(21772345-21772440)
chr2 (605-665)||(27952342-27952401)
chr2 (605-665)||(27956178-27956237)
chr2 (605-665)||(31634110-31634169)
chr2 (573-643)||(12123941-12124011)
chr2 (569-649)||(4184898-4184979)
chr2 (605-666)||(15129396-15129456)
chr2 (580-665)||(18945941-18946026)
chr2 (605-665)||(2155973-2156032)
chr2 (605-665)||(22011442-22011501)
chr2 (617-665)||(29715168-29715216)
chr2 (605-665)||(31636343-31636402)
chr2 (605-665)||(33655634-33655693)
chr2 (605-655)||(32163804-32163854)
chr2 (569-632)||(36615178-36615243)
chr2 (605-666)||(28737912-28737972)
[»] chr4 (21 HSPs)
chr4 (569-654)||(10494873-10494958)
chr4 (569-666)||(13991401-13991498)
chr4 (569-664)||(15848375-15848469)
chr4 (569-655)||(7634050-7634136)
chr4 (568-658)||(18689551-18689641)
chr4 (609-666)||(54700619-54700676)
chr4 (569-666)||(7724099-7724193)
chr4 (568-666)||(17254905-17255003)
chr4 (569-666)||(22486798-22486893)
chr4 (605-662)||(38888016-38888073)
chr4 (569-665)||(53477235-53477333)
chr4 (605-666)||(50515917-50515978)
chr4 (569-649)||(3675081-3675161)
chr4 (605-665)||(6659354-6659413)
chr4 (569-637)||(13990728-13990796)
chr4 (568-656)||(18657074-18657162)
chr4 (458-520)||(26974834-26974896)
chr4 (605-666)||(7723686-7723745)
chr4 (571-648)||(9260545-9260622)
chr4 (573-666)||(40206123-40206215)
chr4 (458-527)||(53477384-53477453)
[»] chr1 (18 HSPs)
chr1 (582-665)||(28660769-28660852)
chr1 (569-666)||(10927164-10927259)
chr1 (569-666)||(12944086-12944183)
chr1 (569-641)||(31915519-31915592)
chr1 (569-658)||(50713683-50713772)
chr1 (569-666)||(10928259-10928356)
chr1 (571-666)||(43681433-43681529)
chr1 (568-651)||(33152756-33152841)
chr1 (581-666)||(31913359-31913443)
chr1 (569-657)||(8221458-8221546)
chr1 (605-665)||(8931226-8931285)
chr1 (569-661)||(9194970-9195061)
chr1 (605-666)||(28661090-28661151)
chr1 (569-666)||(10925710-10925804)
chr1 (605-656)||(13444021-13444071)
chr1 (422-471)||(8968031-8968081)
chr1 (569-666)||(28659587-28659686)
chr1 (605-665)||(50857468-50857527)
[»] chr8 (22 HSPs)
chr8 (569-666)||(24731197-24731294)
chr8 (569-665)||(25479427-25479524)
chr8 (569-655)||(20693769-20693855)
chr8 (569-655)||(14130135-14130221)
chr8 (569-665)||(16598218-16598315)
chr8 (569-669)||(2687712-2687812)
chr8 (569-648)||(2689117-2689195)
chr8 (578-665)||(18468628-18468714)
chr8 (567-666)||(2189744-2189844)
chr8 (569-662)||(24577554-24577647)
chr8 (569-658)||(24578807-24578896)
chr8 (605-666)||(42890398-42890458)
chr8 (605-666)||(42891687-42891747)
chr8 (605-665)||(23570590-23570649)
chr8 (605-658)||(22926679-22926731)
chr8 (605-666)||(24731038-24731099)
chr8 (569-666)||(26374870-26374966)
chr8 (605-665)||(22512070-22512129)
chr8 (605-665)||(22519370-22519429)
chr8 (605-665)||(22921874-22921933)
chr8 (422-476)||(2688971-2689026)
chr8 (605-665)||(6845342-6845401)
[»] chr3 (8 HSPs)
chr3 (573-666)||(2472711-2472803)
chr3 (605-665)||(43303984-43304043)
chr3 (605-658)||(5128915-5128967)
chr3 (569-641)||(2107901-2107972)
chr3 (605-665)||(43306696-43306755)
chr3 (606-657)||(45168351-45168401)
chr3 (605-666)||(33175841-33175902)
chr3 (605-665)||(3063761-3063820)
[»] scaffold0110 (1 HSPs)
scaffold0110 (578-664)||(46758-46844)
[»] chr5 (8 HSPs)
chr5 (569-636)||(18252386-18252453)
chr5 (608-666)||(492576-492634)
chr5 (584-665)||(8456402-8456483)
chr5 (569-665)||(26140313-26140409)
chr5 (573-665)||(19497327-19497419)
chr5 (605-665)||(21848989-21849048)
chr5 (605-658)||(40778817-40778869)
chr5 (605-665)||(9868428-9868488)
[»] scaffold0251 (1 HSPs)
scaffold0251 (569-666)||(9672-9770)
[»] scaffold0054 (1 HSPs)
scaffold0054 (580-658)||(37693-37769)
[»] scaffold0240 (1 HSPs)
scaffold0240 (573-666)||(1632-1724)
[»] scaffold0024 (1 HSPs)
scaffold0024 (617-666)||(145752-145801)
[»] scaffold0531 (1 HSPs)
scaffold0531 (605-651)||(11626-11671)
[»] scaffold0330 (1 HSPs)
scaffold0330 (605-666)||(17646-17706)
[»] scaffold0236 (1 HSPs)
scaffold0236 (605-661)||(16404-16459)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 402 - 674
Target Start/End: Complemental strand, 33215452 - 33215177
Alignment:
Q  402 ggttcatgttggacaccttgatgtaggatggtttctttagtattattattgagcctaattttaataatttatgttgtattttctgttctagtttttcggt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |    
T  33215452 ggttcatgttggacaccttgatgtaggatggtttctttagtattattattgagcctaattttaataatttatgttttattttctgttttaggttttcgat 33215353  T
Q  502 tcattagggtttccttagtgtttaaagtttaaacacttcagttgtagccagagaga--gttttatt-attagagttttttcaatttctggtggattacgg 598  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  33215352 tcattagggtttccttagtgtttaaagtttacacacttcagttgtagctagagagactgttttattcattagagttttttcaatttctggtggattacgg 33215253  T
Q  599 aacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtctctgct 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33215252 aacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagatttagcgtttgctagtctctgct 33215177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 73 - 303
Target Start/End: Complemental strand, 33216447 - 33216217
Alignment:
Q  73 ttgaatagtggaaaaacaaagaagtttgaagttttgttttgatgaatagagaaggttctgtctgaggtttgtgttcagtttgttttgtttctatataaac 172  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216447 ttgaatagtggaaaaacaaagaagtttgaagttttgtattgatgaatagagaaggttctgtctgaggtttgtgttcagtttgttttgtttctatataaac 33216348  T
Q  173 tgaaaaaatcactgtcttctgttaaacattgatagcaatggcatatcattgtaagtgatataacaaaataaagcataaggacaaaaatggtagaatagta 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  33216347 tgaaaaaatcactgtcttctgttaaacattgatagcaatggcatatcattgtaagtggtataacaaaataaagcataaggacaaaaatgggagaatagta 33216248  T
Q  273 gattatggtaaaaacaaaatatatggaatag 303  Q
    |||||||||||||||||||||||||||||||    
T  33216247 gattatggtaaaaacaaaatatatggaatag 33216217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 1127224 - 1127313
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    |||||||| ||||||| ||||| ||| || |||   |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1127224 agagttttctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 1127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 27822238 - 27822140
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||||||||||||| ||||||    |||||||| |||||||||||| ||||||||| |||||  || |||||||||||||||||||    
T  27822238 agagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttttctatttaggtttagcgtttgctag 27822140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 666
Target Start/End: Original strand, 14238410 - 14238503
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||| | |||||| |||| | |||||| | ||||||||| |||||||||||||||||||||||||||| ||| || |||||| |||||||||    
T  14238410 tttttttattttctgatggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctag 14238503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 651
Target Start/End: Complemental strand, 8049084 - 8049003
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 651  Q
    |||||||| ||||||||||||||||  |||| | | ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  8049084 agagttttctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 8049003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 12882092 - 12882193
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagt 667  Q
    ||||||||| ||||||||||||||||| || |||   ||||||||| |||||||||||  |||||||| |||| | |||||||||| || ||||||||||    
T  12882092 agagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctttaaaacttgtctcttctcaatctaggttcagtgtttgctagt 12882191  T
Q  668 ct 669  Q
    ||    
T  12882192 ct 12882193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 18727964 - 18727865
Alignment:
Q  569 agagttttttcaatttctggtggattacggaa-cttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||| | ||| | |||||||||||| |||||||||  ||||| ||||||||||||||||    
T  18727964 agagttttctcaatttctggtggatttcggaaccttatttttcaccgatttattgcttgcaaacttatttctttttctatctaagtttagcgtttgctag 18727865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 3536040 - 3536099
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  3536040 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 3536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 666
Target Start/End: Original strand, 18727115 - 18727174
Alignment:
Q  606 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtgt-ttttcaatctaggtttagcgtttgctag 18727174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 11658901 - 11658997
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||| ||||||||| |  ||||  ||||||||| |||| ||||||||||| ||| ||||||| ||||||||||||| | ||||||    
T  11658901 agagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaatttg-ttcttttcaatctaggtttagtgcttgcta 11658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 658
Target Start/End: Complemental strand, 29340889 - 29340837
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||    
T  29340889 attttcacaagtttgtcgcttgcaaacttgttt-ttttctatctaggtttagcg 29340837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 658
Target Start/End: Original strand, 30052209 - 30052261
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  30052209 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 30052261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 654
Target Start/End: Complemental strand, 33615623 - 33615538
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 654  Q
    |||||||||||||||| ||||| |||  | |||   ||||||||| ||||||||||||||||||||||  ||||  ||||||||||    
T  33615623 agagttttttcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 654
Target Start/End: Complemental strand, 33693910 - 33693861
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 654  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||| ||||    
T  33693910 attttcacaggtttgttgcttgcaaatttgtttcttttcaatctatgttt 33693861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 3542251 - 3542310
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||||||| |||||||| |||||||  |||||||||||||| ||||||    
T  3542251 attttcacaagtttgtcgcttacaaacttg-ttcttttctatctaggtttagcgcttgcta 3542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 30049922 - 30049981
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  || ||||||||||| ||||||    
T  30049922 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatataggtttagcgcttgcta 30049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 655
Target Start/End: Original strand, 22873801 - 22873870
Alignment:
Q  586 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    ||||||||| |||||| |   ||||||| ||||||||| ||||||||||| |||||| ||| ||||||||    
T  22873801 tggtggattccggaacctttatttcacaagtttgtcgcatgcaaacttgtctcttttcaatttaggttta 22873870  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 569 - 657
Target Start/End: Original strand, 24840113 - 24840201
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    |||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  24840113 agagttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 24840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 568 - 666
Target Start/End: Original strand, 1369774 - 1369872
Alignment:
Q  568 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||||||||||||| ||||||   ||||| ||| |||| ||||||||||||||||||||||| |||||||||||| || |||||||    
T  1369774 tagagttttctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggtttaacgcttgctag 1369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 658
Target Start/End: Complemental strand, 6451869 - 6451780
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    |||||||||||||||| || |||||| || ||| | |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  6451869 agagttttttcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtttcctttcaatctagatttagcg 6451780  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 27142636 - 27142722
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| |||||||||||||| ||  |||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  27142636 agagttttctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggttta 27142722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 11000945 - 11000848
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||  |||||||||||||||| | ||||   ||||||||  ||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  11000945 agagttttcccaatttctggtggattcctgaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctag 11000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 658
Target Start/End: Complemental strand, 4888799 - 4888716
Alignment:
Q  574 tttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  4888799 tttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttg-ttcttttctatctaggttcagcg 4888716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 27309698 - 27309638
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  27309698 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 1883495 - 1883556
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  1883495 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttagtgtttgctag 1883556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 5934610 - 5934671
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  5934610 attttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagcgcttgctag 5934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 605 - 657
Target Start/End: Complemental strand, 1753681 - 1753629
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  1753681 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggtttagc 1753629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 1874544 - 1874604
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  1874544 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttagtgtttgcta 1874604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 657
Target Start/End: Original strand, 11228951 - 11229039
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    |||||||| |||||||||||||||||  |||||    |||||||| ||||||||| ||||||||||||  |||| ||||||||||||||    
T  11228951 agagttttatcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagc 11229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 460 - 527
Target Start/End: Complemental strand, 18790429 - 18790362
Alignment:
Q  460 ttttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaa 527  Q
    |||||||||||| |||| ||||||||||| | | ||||||||||||||||||||| ||||| ||||||    
T  18790429 ttttaataatttttgttttattttctgttttggattttcggttcattagggtttctttagtatttaaa 18790362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 655
Target Start/End: Complemental strand, 8916496 - 8916410
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| |||||||||||||  |||| ||||||||||||    
T  8916496 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcattttaaatctaggttta 8916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 11228690 - 11228788
Alignment:
Q  569 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||| ||||||||||   ||||   |||| |||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||    
T  11228690 agagttttctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtttcttttttatcaaggtttagtgtttgctag 11228788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 666
Target Start/End: Original strand, 30217794 - 30217880
Alignment:
Q  578 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||| |||||||||| | |||||  ||||||||| ||||||||||||| ||||||||   ||| ||||||||||||||| |||||||    
T  30217794 tcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttgtt--ctttcaatctaggtttagcgcttgctag 30217880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 859239 - 859180
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  859239 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 1217243 - 1217184
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  1217243 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 13882769 - 13882710
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13882769 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 13886242 - 13886183
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13886242 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 3778823 - 3778760
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 636  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||| |||||||||||||||||    
T  3778823 ttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaacttgtt 3778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 1365641 - 1365738
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||| |||||||||| |||||   ||||||||| |||  |||||| |||||||||| ||||  ||||||||||||||| |||||||    
T  1365641 agagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaacttgttcctttc-aatctaggtttagcgcttgctag 1365738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 1785675 - 1785621
Alignment:
Q  420 tgatgtaggatggtttctttagtattatta-ttgagcctaattttaataatttat 473  Q
    ||||||| || ||||||||||||||||||| || |||||||||||||||||||||    
T  1785675 tgatgtatgagggtttctttagtattattatttcagcctaattttaataatttat 1785621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 666
Target Start/End: Complemental strand, 4133394 - 4133296
Alignment:
Q  568 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||| ||||||||    
T  4133394 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctag 4133296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 666
Target Start/End: Original strand, 13466756 - 13466798
Alignment:
Q  624 ttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  13466756 ttgcaaacttgtttctttttaatataggtttagcgcttgctag 13466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 655
Target Start/End: Complemental strand, 7803133 - 7803064
Alignment:
Q  586 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    ||||||||| |||||| | ||||||| | |||||| |||||||||||||||||||||  | |||||||||    
T  7803133 tggtggattccggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggttta 7803064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 657
Target Start/End: Original strand, 1786653 - 1786741
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    ||||||||  ||||||||| ||||||  |||||   |||||| || ||||||||||||||||||||||  ||||  |||||||||||||    
T  1786653 agagttttcgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagc 1786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 667
Target Start/End: Original strand, 35814841 - 35814938
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagt 667  Q
    |||||||| ||||||| |||| ||||   |||| | ||||| ||| |||||||||||||||| ||| ||| ||| ||||||| ||||| ||||||||||    
T  35814841 agagttttctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgcaaagttggttc-tttcaatctagatttagtgtttgctagt 35814938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 1220523 - 1220464
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||| ||||||||||| ||| |||  || ||||||||||||||||||    
T  1220523 attttcacaagtttgtcgtttgcaaacttg-ttcatttctatgtaggtttagcgtttgcta 1220464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 23457616 - 23457713
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||| ||||||||| ||||||   ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  23457616 agagttttctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagcgcttgctag 23457713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 23456545 - 23456631
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| ||| |||| |||||||| | |||||| ||||||| | |||||||||||||||||||||||||||| ||| ||||||||    
T  23456545 agagttttctcagtttccggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggttta 23456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 664
Target Start/End: Complemental strand, 32162086 - 32161993
Alignment:
Q  571 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 664  Q
    |||||| ||| ||||||||||||| | ||||   ||||||||| ||||||| ||||||||||||||||||||  ||||||||||| || |||||    
T  32162086 agttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaacttgtttcttttcgatctaggtttaacgcttgct 32161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 33051588 - 33051685
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||| ||||||| | ||||   ||||||| | ||||||||||||||||||||||  |||| ||| ||||||||||| |||||||    
T  33051588 agagttttctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagcgcttgctag 33051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 658
Target Start/End: Complemental strand, 5171704 - 5171615
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    |||||||| ||||||||| |||||||   ||||   ||||| ||| ||||||||||||||||||||| |||||| ||||||| |||||||    
T  5171704 agagttttctcaatttctagtggattcttgaaccctatttttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcg 5171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 636
Target Start/End: Original strand, 8294546 - 8294615
Alignment:
Q  567 ttagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 636  Q
    ||||||||||||||||||||||||||||| | |||   ||||| ||| ||||||||||||||||| ||||    
T  8294546 ttagagttttttcaatttctggtggattatgaaacactatttttacaagtttgtcgcttgcaaacgtgtt 8294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 36647299 - 36647359
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||    
T  36647299 attttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgctag 36647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 21772345 - 21772440
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    |||||||| ||||||| || ||||||  |||||   ||||||| | ||||||||||||||||||||||| |||| |||||| |||||||||| ||||    
T  21772345 agagttttctcaatttgtgatggattcaggaaccctattttcataagtttgtcgcttgcaaacttgttt-ttttcaatctaagtttagcgttggcta 21772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 27952401 - 27952342
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27952401 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 27956237 - 27956178
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27956237 attttcataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 31634110 - 31634169
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  31634110 attttcacaagtttgtcgctagcaaacttg-ttcttttctatctaggtttagcgtttgcta 31634169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 643
Target Start/End: Complemental strand, 12124011 - 12123941
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt 643  Q
    |||| ||||||| ||||||||| | ||||   |||||||||||||||||||||||||||||| || |||||    
T  12124011 ttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttgatttttttt 12123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 649
Target Start/End: Original strand, 4184898 - 4184979
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 649  Q
    ||||||||| ||||||||| ||||||| || |||   ||||||||| ||||||||||||| ||||| |||||||| ||||||    
T  4184898 agagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaacttatttcttttgaatcta 4184979  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 15129396 - 15129456
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||||||||| |||||| |||||||  |||||||||||||| |||||||    
T  15129396 attttcacaagtttgtcgcttgcgaacttg-ttcttttctatctaggtttagcgcttgctag 15129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 665
Target Start/End: Original strand, 18945941 - 18946026
Alignment:
Q  580 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||||| ||| |||||||   || ||||| |||||||||||||||| || |||||| | |||||| |||||||| ||||||    
T  18945941 aatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaatttatttcttctcaatctacgtttagcgcttgcta 18946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 2155973 - 2156032
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||| ||||||    
T  2155973 attttcacaagtttgtcgctcgcaaacttg-ttcttttctatctaggtttagcgcttgcta 2156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 22011442 - 22011501
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||| |||||||||||| |||||||  |||||||||||||| ||||||    
T  22011442 attttcacaagtttgtcacttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 22011501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 665
Target Start/End: Original strand, 29715168 - 29715216
Alignment:
Q  617 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  29715168 ttgtcgcttgcaaacttttttattttcaatctaggtttagagtttgcta 29715216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 31636343 - 31636402
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||| | |||||||  |||||||||||||| ||||||    
T  31636343 attttcacaagtttgtcgcttgcaaactag-ttcttttctatctaggtttagcgcttgcta 31636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 33655634 - 33655693
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||||||||||||||||| | ||||  |||||||||||||| ||||||    
T  33655634 attttcacaagtttgtcgcttgcaaacttgtat-ttttctatctaggtttagcgcttgcta 33655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 32163854 - 32163804
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    ||||||||| ||||| ||||| ||||||| |||||||| ||||||||||||    
T  32163854 attttcacaagtttgacgcttacaaacttatttcttttcaatctaggttta 32163804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 36615178 - 36615243
Alignment:
Q  569 agagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaact 632  Q
    |||||||||||  ||||||||||||||| |||||| | ||||| |||  |||||||||||||||||    
T  36615178 agagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaact 36615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 28737912 - 28737972
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||| | ||||||||||||||||||||  |||||| ||||||||||||||  |||||||    
T  28737912 attttcaaaagtttgtcgcttgcaaacttg-ctcttttcaatctaggtttagcacttgctag 28737972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 654
Target Start/End: Original strand, 10494873 - 10494958
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 654  Q
    |||||||| ||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  10494873 agagttttctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttttccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 13991498 - 13991401
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| |||| |||||||||||| | |||| | |||||| || |||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  13991498 agagttttctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaacttgtttcttttcaatctagatttagcgcttgctag 13991401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 664
Target Start/End: Original strand, 15848375 - 15848469
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 664  Q
    |||||||| ||||||| ||||||||| |||||||   ||||||||  |||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  15848375 agagttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgcaa-cttgtttcttttcaatctagatttagcgtttgct 15848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 7634050 - 7634136
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| ||||||||||||| ||||| ||||||||||||    
T  7634050 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttccttttcaatctaggttta 7634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 658
Target Start/End: Complemental strand, 18689641 - 18689551
Alignment:
Q  568 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||| |||||||||||||||||  | |||   ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||||    
T  18689641 tagagttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagcg 18689551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 609 - 666
Target Start/End: Complemental strand, 54700676 - 54700619
Alignment:
Q  609 tcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  54700676 tcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctag 54700619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 7724193 - 7724099
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| ||||||   |||||||   |||||||||| ||||||||| ||||||| ||| ||||||||||  |||||||    
T  7724193 agagttttctcaatttctggtggattccggaaccctattttca---gtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctag 7724099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 666
Target Start/End: Complemental strand, 17255003 - 17254905
Alignment:
Q  568 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||||||||||||    
T  17255003 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctag 17254905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 22486893 - 22486798
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| |||||| | ||||||||| | |||||||||||||||||| |  ||||  || ||||||||||| |||||||    
T  22486893 agagttttctcaatttctggtggattccggaacct-attttcacaag-ttgtcgcttgcaaacttggtctttttctatataggtttagcgcttgctag 22486798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 662
Target Start/End: Complemental strand, 38888073 - 38888016
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 662  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||||||| ||||||    
T  38888073 attttcacaagtttgtcgcttgcaaatttgtttattttcaatctaggtttaacgtttg 38888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 569 - 665
Target Start/End: Complemental strand, 53477333 - 53477235
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgcta 665  Q
    |||||||| |||||||||||||||||    |||   ||||||||||||||| |||||| |||||||||| |||  |  |||||||||||||||||||||    
T  53477333 agagttttctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgtttttttactctatctaggtttagcgtttgcta 53477235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 666
Target Start/End: Complemental strand, 50515978 - 50515917
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||||||||||||||||||||| | | |||| || ||||| |||||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctag 50515917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 649
Target Start/End: Original strand, 3675081 - 3675161
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 649  Q
    |||||||| | ||||||||||||||| || ||||| | |||||  | ||| ||| ||||||||||||||||||| ||||||    
T  3675081 agagttttcttaatttctggtggattccgaaactttaatttcatggatttatcgtttgcaaacttgtttcttttcaatcta 3675161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 6659413 - 6659354
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||| ||||||| ||||||    
T  6659413 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctagatttagcgcttgcta 6659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 637
Target Start/End: Complemental strand, 13990796 - 13990728
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgttt 637  Q
    ||||||||||||||||||| |||||| | ||||   ||||||||| ||||||  |||||||||||||||    
T  13990796 agagttttttcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgttt 13990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 656
Target Start/End: Complemental strand, 18657162 - 18657074
Alignment:
Q  568 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 656  Q
    ||||||||| |||||||| ||||||||  | ||    ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  18657162 tagagttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttag 18657074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 520
Target Start/End: Complemental strand, 26974896 - 26974834
Alignment:
Q  458 aattttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagt 520  Q
    |||||||||||||| |||| |||||||| || | ||||||  ||||||||| |||||||||||    
T  26974896 aattttaataatttttgttttattttctattttggttttttagttcattagagtttccttagt 26974834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 666
Target Start/End: Complemental strand, 7723745 - 7723686
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||||| |||||||| |||||||    
T  7723745 attttcacaagtttgtagcttgcaaacttg-ttcttttcaatcta-gtttagcgcttgctag 7723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 9260545 - 9260622
Alignment:
Q  571 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 648  Q
    |||||| |||||||||||||||||  | |||   |||||| || |||||||| |||||||||||||||| || |||||    
T  9260545 agttttctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtttctcttaaatct 9260622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 666
Target Start/End: Original strand, 40206123 - 40206215
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||| ||||||||||||| ||| || |||   ||||||||| ||||||||||||| ||||||| || ||| ||| ||| ||||||| |||||||    
T  40206123 ttttctcaatttctggtgaattccgaaacactattttcacaagtttgtcgcttgcgaacttgtctc-tttcaatttagatttagcgcttgctag 40206215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 53477453 - 53477384
Alignment:
Q  458 aattttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaa 527  Q
    |||||||||||||| |||| |||||| |||| | | |||||||| |||||| ||||||||| | ||||||    
T  53477453 aattttaataatttctgttttattttatgttttggattttcggtccattagagtttccttaatatttaaa 53477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 665
Target Start/End: Complemental strand, 28660852 - 28660769
Alignment:
Q  582 tttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  28660852 tttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgcta 28660769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 10927164 - 10927259
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| ||||||    |||||||| ||||||||||||||||||||||  |||| | |||||||||||||||||||||    
T  10927164 agagttttctcaatttctggtggattccggaaccc--ttttcacaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgctag 10927259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 12944086 - 12944183
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||||||| ||||||| ||||||| |||||||    
T  12944086 agagttttctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagcgcttgctag 12944183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 31915519 - 31915592
Alignment:
Q  569 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 641  Q
    ||||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||    
T  31915519 agagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 50713683 - 50713772
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    |||||||| ||||||||||||||||| || |||   ||||||||| ||||||||| ||| ||||||| |||||| |||||||||||||||    
T  50713683 agagttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagcg 50713772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 10928259 - 10928356
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||| | ||||||| || ||| | ||||||||| ||||||| ||| ||||||| | |||||||||||||||||||||  |||||||    
T  10928259 agagttttctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatctaggtttagcacttgctag 10928356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 571 - 666
Target Start/End: Original strand, 43681433 - 43681529
Alignment:
Q  571 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 666  Q
    |||||| | |||||||||| ||||  ||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  43681433 agttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttgctag 43681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 651
Target Start/End: Complemental strand, 33152841 - 33152756
Alignment:
Q  568 tagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 651  Q
    ||||||||||||  ||||||||||||||| ||||||   ||| ||  | |||||||||||||||||||||||||||| ||||||||    
T  33152841 tagagttttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttcaatctagg 33152756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 666
Target Start/End: Original strand, 31913359 - 31913443
Alignment:
Q  581 atttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||||||||| |||||    ||||| ||| |||||||||||||||||||||||| ||| || |||||||||||| |||||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtttc-tttcaacctaggtttagcgcttgctag 31913443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 657
Target Start/End: Original strand, 8221458 - 8221546
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    |||||||| ||||||||||||||||| | ||||   ||||||| | |||||||| |||||||||||| ||| || ||||| ||||||||    
T  8221458 agagttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagc 8221546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 8931226 - 8931285
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||||    
T  8931226 attttcacaagtttatcgcttgcaaacttgttt-ttttcaatctaggtttagcgcttgcta 8931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 661
Target Start/End: Complemental strand, 9195061 - 9194970
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 661  Q
    |||||||||||||||| ||||||||||  ||||   |||  |||| ||||||||||||||||||||||||  || |||||||||||| |||||    
T  9195061 agagttttttcaatttttggtggattattgaaccctattaacacatgtttgtcgcttgcaaacttgtttc-attcaatctaggtttaacgttt 9194970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 666
Target Start/End: Complemental strand, 28661151 - 28661090
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||| |||||||| ||||||||||||||||||||| | ||| ||||||||||  |||||||    
T  28661151 atttttacaggtttttcgcttgcaaacttgtttcttatcaatttaggtttagcacttgctag 28661090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 10925710 - 10925804
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||||||||||  |||||||| | ||||   ||||| ||| |||||||||||||||| ||||   |||| ||| ||||||||||| |||||||    
T  10925710 agagttttttcaattttcggtggattccagaaccatatttttacaagtttgtcgcttgcaaaattgt---ttttcaatttaggtttagcgcttgctag 10925804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 656
Target Start/End: Complemental strand, 13444071 - 13444021
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 656  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  13444071 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttag 13444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 8968081 - 8968031
Alignment:
Q  422 atgtaggatggtttctttagtattatta-ttgagcctaattttaataattt 471  Q
    |||||||| ||||||||||||||||||| || |||| ||||||||||||||    
T  8968081 atgtaggagggtttctttagtattattatttcagcccaattttaataattt 8968031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 28659686 - 28659587
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgctag 666  Q
    |||||||||| ||||||| ||||||  |||||    ||||||||| |||| || ||||||||||||||| |||  | ||| |||||||||| ||||||||    
T  28659686 agagtttttttaatttctagtggatatcggaatccaattttcacaagtttatcccttgcaaacttgttttttttatcaatataggtttagcatttgctag 28659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 50857527 - 50857468
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||||||| |||||||  |||||||  |||||||||||||| ||||||    
T  50857527 attttcacaagtttgtcgcttacaaactt-attcttttctatctaggtttagcgcttgcta 50857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 24731197 - 24731294
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| |||||||||| || ||| || ||||  ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||    
T  24731197 agagttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgcttgctag 24731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 665
Target Start/End: Complemental strand, 25479524 - 25479427
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttct-ttttaatctaggtttagcgtttgcta 665  Q
    |||||||| |||| |||||||||||| |||||| | ||||||| || |||||| ||||||| ||||||||| |||||| |||||||||||||||||||    
T  25479524 agagttttctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtttcttttttaacctaggtttagcgtttgcta 25479427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 20693769 - 20693855
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| |||||||||| |||||| ||||||   |||||||||  |||||||||||||||||||||| |||| ||||||||||||    
T  20693769 agagttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggttta 20693855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 14130135 - 14130221
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 655  Q
    |||||||| ||||||||||||||||| |||||| | |||||||||  ||| |||||||||||||||| ||||||  |||||| ||||    
T  14130135 agagttttctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaacttgtctcttttcgatctagattta 14130221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 16598218 - 16598315
Alignment:
Q  569 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    |||||||| ||||||| |||||| |||  |||||   ||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  16598218 agagttttctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 2687712 - 2687812
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtc 668  Q
    |||||||| ||||||||| |||||||   ||||   ||||||||| ||||||||||||||||||||||  ||||  |||||||||||||| | |||||||    
T  2687712 agagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagcgctcgctagtc 2687811  T
Q  669 t 669  Q
    |    
T  2687812 t 2687812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 648
Target Start/End: Original strand, 2689117 - 2689195
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 648  Q
    |||||||| |||||||||| |||||  ||||||   |||||||||| ||||||||||||||||||||||||||| |||||    
T  2689117 agagttttctcaatttctg-tggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtttcttttcaatct 2689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 578 - 665
Target Start/End: Original strand, 18468628 - 18468714
Alignment:
Q  578 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||||||||||| ||||||   ||||||||| ||||||||||||||| |||| |||||||  | |||||||||||| ||||||    
T  18468628 tcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttg-ttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 666
Target Start/End: Complemental strand, 2189844 - 2189744
Alignment:
Q  567 ttagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 664  Q
    |||||||||||||  | ||| ||||||||| |  ||| | ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  2189844 ttagagttttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgct 2189746  T
Q  665 ag 666  Q
    ||    
T  2189745 ag 2189744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 662
Target Start/End: Complemental strand, 24577647 - 24577554
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 662  Q
    |||||||| |||||||||||||||||||| |||   ||||||||| |||||||  |||||||||||| ||| || ||| || ||||| ||||||    
T  24577647 agagttttctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgtctctcttcaatataagtttatcgtttg 24577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 658
Target Start/End: Complemental strand, 24578896 - 24578807
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||  |||||||| ||||||| | ||||   |||||||||| |||  ||||||||||||||||||||||  ||||||||||||||    
T  24578896 agagttttcacaatttctagtggattccagaaccctattttcacagatttaccgcttgcaaacttgtttcttttcgatctaggtttagcg 24578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 42890398 - 42890458
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42890398 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42890458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 666
Target Start/End: Complemental strand, 42891747 - 42891687
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42891747 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42891687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 23570590 - 23570649
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  23570590 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 658
Target Start/End: Complemental strand, 22926731 - 22926679
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  22926731 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 22926679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 24731038 - 24731099
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||  ||||||| |||||||    
T  24731038 attttcacaagtttgttgcttgcaaacttgttccttttcaatctaaatttagcgcttgctag 24731099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 26374870 - 26374966
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| | ||||||||||||||| || |||   ||||| ||| ||||||||||||| |||||| ||||||| |||||||| ||| || |||||||    
T  26374870 agagttttcttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttg-ttcttttcaatctaggcttaacgcttgctag 26374966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 22512129 - 22512070
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22512129 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22512070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 22519429 - 22519370
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22519429 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 22921933 - 22921874
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||  |||||||  |||||||||||||| ||||||    
T  22921933 attttcacaagtttgtcgcttgcaaactt-attcttttctatctaggtttagcgcttgcta 22921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 2688971 - 2689026
Alignment:
Q  422 atgtaggatggtttctttagtattatta-ttgagcctaattttaataatttatgtt 476  Q
    |||||||| ||||||||||||||| ||| || ||||||||||||||||||| ||||    
T  2688971 atgtaggagggtttctttagtatttttatttcagcctaattttaataatttctgtt 2689026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 6845342 - 6845401
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||| ||||||| ||||||||| |||||  |||||||||||||| ||||||    
T  6845342 attttcacaagtttatcgcttgtaaacttgtt-cttttctatctaggtttagcgcttgcta 6845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 666
Target Start/End: Complemental strand, 2472803 - 2472711
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||||||| |||||||||||| || ||| ||| ||||||||||| |||||||    
T  2472803 ttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtctc-tttcaatttaggtttagcgcttgctag 2472711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 43304043 - 43303984
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  43304043 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43303984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 658
Target Start/End: Original strand, 5128915 - 5128967
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  5128915 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 5128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 2107972 - 2107901
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 641  Q
    |||||||| ||||| ||||||||||| |||||| | ||||| ||| |||||| |||||||||| |||||||||    
T  2107972 agagttttctcaatctctggtggatt-cggaaccttatttttacaagtttgttgcttgcaaacctgtttcttt 2107901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 43306755 - 43306696
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||| ||||||||||||| |||||||  |||||||||||||| ||||||    
T  43306755 attttcacaagtttgttgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43306696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 657
Target Start/End: Complemental strand, 45168401 - 45168351
Alignment:
Q  606 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 657  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||||    
T  45168401 ttttcacaagtttgtcgcttgcaaacttgttt-atttcaatctaggtttagc 45168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 33175841 - 33175902
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||||| | |||||||  |||||||||||| |||||| ||| |||||||| ||||||||||    
T  33175841 attttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctag 33175902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 3063820 - 3063761
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| ||||||||||||||||| | ||||||||  ||||||||||| || ||||||    
T  3063820 attttcacaagtttgtcgcttgcaaac-tctttcttttctatctaggtttaacgcttgcta 3063761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 46844 - 46758
Alignment:
Q  578 tcaatttctggtggattacggaac-ttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 664  Q
    ||||||| ||||||||| |||||| || ||||| | |||||||||||||||||||||| |||||||  |||||||||||||| |||||    
T  46844 tcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgct 46758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 636
Target Start/End: Original strand, 18252386 - 18252453
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 636  Q
    |||||||| ||||||||| ||||||||  ||||   ||||||||||||||||||||||||||||||||    
T  18252386 agagttttctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgtt 18252453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 666
Target Start/End: Original strand, 492576 - 492634
Alignment:
Q  608 ttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||| |||||||||||||||||||||||||||| ||||||  ||||||| |||||||    
T  492576 ttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaaatttagcgcttgctag 492634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 665
Target Start/End: Complemental strand, 8456483 - 8456402
Alignment:
Q  584 tctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||||| |||||    ||||| ||| ||| ||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  8456483 tctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgcta 8456402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 26140313 - 26140409
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    |||||||| ||||||| |||||||||   ||||   ||||||| | ||||||||||||||| |||||||  ||| ||||||| ||||||||||||||    
T  26140313 agagttttctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgcta 26140409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 665
Target Start/End: Complemental strand, 19497419 - 19497327
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    |||| ||||||| || |||||| ||||||   ||||||||| ||||||||||||||||||||||  |||||  ||||  ||||||| ||||||    
T  19497419 ttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgttctttttttttctacatttagcgcttgcta 19497327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 21849048 - 21848989
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||||    
T  21849048 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttggcgcttgcta 21848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 658
Target Start/End: Complemental strand, 40778869 - 40778817
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    ||||| ||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  40778869 atttttacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 40778817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 665
Target Start/End: Complemental strand, 9868488 - 9868428
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 665  Q
    ||||||||| |||||| ||||| ||||||||||||||| ||| ||| |||| | |||||||    
T  9868488 attttcacaagtttgttgcttgtaaacttgtttcttttcaatatagatttaacatttgcta 9868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 9672 - 9770
Alignment:
Q  569 agagttttttcaatttctggtggattacggaacttgattttcaca--ggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||| ||||||||||||||||| ||||||   |||||||||   ||| |||||||| ||||||| ||||||| |||||||||||| || |||||||    
T  9672 agagttttctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttg-ttcttttcaatctaggtttaccgcttgctag 9770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 658
Target Start/End: Original strand, 37693 - 37769
Alignment:
Q  580 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 658  Q
    |||||||||| ||||  ||||| | ||||||| | |||||||||||||||||||| ||||||| |||||||||||||||    
T  37693 aatttctggtcgattttggaacct-attttcataagtttgtcgcttgcaaacttg-ttcttttcaatctaggtttagcg 37769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 666
Target Start/End: Original strand, 1632 - 1724
Alignment:
Q  573 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||| |||| |||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  1632 ttttctcaaattctggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 145752 - 145801
Alignment:
Q  617 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    |||||||||||||||||| || |||| ||||||||||||||| |||||||    
T  145752 ttgtcgcttgcaaacttgatttttttcaatctaggtttagcgattgctag 145801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 651
Target Start/End: Complemental strand, 11671 - 11626
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 651  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  11671 attttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 11626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 666
Target Start/End: Original strand, 17646 - 17706
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 666  Q
    ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  17646 attttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 17706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 661
Target Start/End: Original strand, 16404 - 16459
Alignment:
Q  605 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 661  Q
    |||||| || ||||||||||||||||||  ||| |||||||||||||||||| ||||    
T  16404 attttctcaagtttgtcgcttgcaaactcattt-tttttaatctaggtttagtgttt 16459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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