View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13995_high_23 (Length: 366)
Name: NF13995_high_23
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 38100329 - 38100643
Alignment:
| Q |
33 |
attttctacttgtctcttctctgcatggtgatttcccatttgttctgcttcttgtcataatgcttgaagagccataccacttgcttttatcaatatgcaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38100329 |
attttctacttgtctcttctctgcatggtgatttcccatttgttctgcttcttgtcataatgcttgaagagccataccacttgcttttatcaatatgcaa |
38100428 |
T |
|
| Q |
133 |
tgtgtttggtagtgtagattcctaacattaccaaataaaccataacaaatattgagaatcattcatttgttttcaaaggtgattagtaattagcagaatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38100429 |
tgtgtttggtagtgtagattcctaacattaccaaataaaccataacaaatattgagaatcattcatttgttttcaaaggtgattagtaattagcagaatt |
38100528 |
T |
|
| Q |
233 |
gaatatttatggagattaatttataactcaccagaaacaacactgttgcacagtgcttaacgacctccaaattcatccgaacatcatctaggctcctgct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38100529 |
gaatatttatggagattaatttataactcaccagaaacaacactgttgcacagtgcttaacgacctccaaattcatccgaacatcatctaggctcctgct |
38100628 |
T |
|
| Q |
333 |
tcaaattagtcataa |
347 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38100629 |
tcaaattagtcataa |
38100643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University