View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_high_26 (Length: 291)

Name: NF13995_high_26
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_high_26
NF13995_high_26
[»] chr4 (3 HSPs)
chr4 (1-282)||(52368710-52369002)
chr4 (113-243)||(15607481-15607609)
chr4 (172-243)||(16562113-16562184)
[»] chr3 (2 HSPs)
chr3 (1-208)||(16250046-16250256)
chr3 (172-243)||(23494090-23494161)
[»] chr6 (2 HSPs)
chr6 (111-243)||(17833817-17833949)
chr6 (111-243)||(16544210-16544342)
[»] chr1 (1 HSPs)
chr1 (111-243)||(35573479-35573611)
[»] chr7 (2 HSPs)
chr7 (111-243)||(10375032-10375164)
chr7 (172-243)||(37635077-37635148)
[»] chr5 (1 HSPs)
chr5 (111-243)||(22477892-22478024)
[»] chr2 (3 HSPs)
chr2 (111-243)||(36307979-36308111)
chr2 (111-243)||(5920393-5920525)
chr2 (144-218)||(17492890-17492964)
[»] scaffold0961 (1 HSPs)
scaffold0961 (111-243)||(111-243)
[»] scaffold1825 (1 HSPs)
scaffold1825 (172-243)||(869-940)
[»] chr8 (1 HSPs)
chr8 (144-216)||(6005395-6005467)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 52369002 - 52368710
Alignment:
Q  1 aagaacaagagcagctaaggtatttaaatttctaaaaatataattaaattgatattacattataactttagttgttgtcttattcatgttactttatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52369002 aagaacaagagcagctaaggtatttaaatttctaaaaatataattaaattgatattacattataactttagtttttgtcttattcatgttactttatgga 52368903  T
Q  101 acaatgttttttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52368902 acaatgttttttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacatt 52368803  T
Q  201 ggcttgaagctgtaagttgcttttcttacattatttcattcaaa-----------ttgaaattgaattacactttatatatatagtttttgat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  52368802 ggcttgaagctgtaagttgcttttcttacattatttcattcaaattcaatttaatttgaaattgaattacactttatatatatagtttttgat 52368710  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 15607609 - 15607481
Alignment:
Q  113 actttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagctg 212  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | || || ||||||||||||     
T  15607609 actttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaa-gcacaaaaattagcattacagcaatggcttgaagcta 15607511  T
Q  213 taagttgcttttcttacattatttcattcaa 243  Q
    |||||| | ||||||||||||||||||||||    
T  15607510 taagtttc-tttcttacattatttcattcaa 15607481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 16562184 - 16562113
Alignment:
Q  172 aaaggcacaaaaattagcacttcaacattggcttgaagctgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||||||||||| | | ||||| |||||||||||| |||||| |||||||||||||| |||||||||    
T  16562184 aaaggcacaaaaattagaattacaacaatggcttgaagctataagtttcttttcttacattagttcattcaa 16562113  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16250046 - 16250256
Alignment:
Q  1 aagaacaagagcagctaaggtatttaaatttctaaaaatataattaaattgatattacattataactttagttgttgtcttattcatgttac-------t 93  Q
    ||||||||||| |||||| |||||||||||||||||    ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||       |    
T  16250046 aagaacaagagaagctaatgtatttaaatttctaaa----taattgaattgatataacattataactttaggtgttgtcttattcatgttacaatatttt 16250141  T
Q  94 ttatggaacaatgttttttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcactt 193  Q
     |||||||||| |||| |||||||||||||| ||||||||||||||||||| | || |||||||||||||||| ||||||||||| ||||||||||| |     
T  16250142 atatggaacaaggtttgttactttgtgctaaatgtaactcttttttgtaaatgctgaaaaaggtttatctaagaatgaaaaggcataaaaattagcatta 16250241  T
Q  194 caacattggcttgaa 208  Q
    ||||| ||| |||||    
T  16250242 caacaatggtttgaa 16250256  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 23494161 - 23494090
Alignment:
Q  172 aaaggcacaaaaattagcacttcaacattggcttgaagctgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||||||||||| | | ||||| |||||||||||| |||||| |||||||||| ||| |||||||||    
T  23494161 aaaggcacaaaaattagaattacaacaatggcttgaagctataagtttcttttcttacgttagttcattcaa 23494090  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 17833817 - 17833949
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| ||||||||||     
T  17833817 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaatgcataaaaattagcaatacaacaatggcttgaagt 17833916  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    |||||||||||||||||||||| ||||||||||    
T  17833917 tgtaagttgcttttcttacattgtttcattcaa 17833949  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 16544342 - 16544210
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| || |||| ||| ||||||||| | | ||||| ||| ||||||     
T  16544342 ttactttgtgctaaatgtaactcttttttgtaaatgttgaaaaaggtttatctaagaataaaaatgcataaaaattagtaatgcaacaatgggttgaagt 16544243  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    |||||||||||||||||||||||||||||||||    
T  16544242 tgtaagttgcttttcttacattatttcattcaa 16544210  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 35573479 - 35573611
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| | ||||||| ||||||||||     
T  35573479 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaatgcataaaaattagtaattcaacaatggcttgaagt 35573578  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||| |||||||||||||||||||||||    
T  35573579 tgtaagttgtttttcttacattatttcattcaa 35573611  T

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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 10375032 - 10375164
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| ||||||||||     
T  10375032 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaatgcataaaaattagcaatacaacaatggcttgaagt 10375131  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||| ||||||| |||||||||||||||    
T  10375132 tgtaagttgtttttcttgcattatttcattcaa 10375164  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 37635148 - 37635077
Alignment:
Q  172 aaaggcacaaaaattagcacttcaacattggcttgaagctgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||||||||||| | | ||||| |||||||||||| |||||| |||||||||||||| |||||||||    
T  37635148 aaaggcacaaaaattagaattacaacaatggcttgaagctataagtttcttttcttacattagttcattcaa 37635077  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 22478024 - 22477892
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| | | ||||| ||||||||||     
T  22478024 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaatgcataaaaattagtaatacaacaatggcttgaagt 22477925  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||| |||||||||||||||||||||||    
T  22477924 tgtaagttgtttttcttacattatttcattcaa 22477892  T

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Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 36308111 - 36307979
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  || ||||||||| | | ||||| ||||||||||     
T  36308111 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaagaatgaaaatacataaaaattagtaatacaacaatggcttgaagt 36308012  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    |||||||||||||||||||||||||||||||||    
T  36308011 tgtaagttgcttttcttacattatttcattcaa 36307979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 5920393 - 5920525
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||  || ||||||||| | | ||||| ||||||||||     
T  5920393 ttactttgtgctaaatgtaactcttttttgtaaaggttggaaaaggtttatctaacaatgaaaatacataaaaattagtaatacaacaatggcttgaagt 5920492  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    |||||||||||||||||||||||||||||||||    
T  5920493 tgtaagttgcttttcttacattatttcattcaa 5920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 17492890 - 17492964
Alignment:
Q  144 aggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagctgtaagtt 218  Q
    ||||||| |||||||| || |||||||| || |||||||||||||| || |||||||||||||||||||||||||    
T  17492890 aggttgggaaaggtttgtccaaggatgacaaagcacaaaaattagccctccaacattggcttgaagctgtaagtt 17492964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 111 - 243
Alignment:
Q  111 ttactttgtgctaagtgtaactcttttttgtaaaggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagc 210  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||   ||||| ||||||||||     
T  111 ttactttgtgctaaatgtaactattttttgtaaaggttggaaaaggtttatctaagaatgaaaatgcataaaaattagcagcacaacaatggcttgaagt 210  T
Q  211 tgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||| |||||||||||||||||||||||    
T  211 tgtaagttgattttcttacattatttcattcaa 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1825 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1825
Description:

Target: scaffold1825; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 940 - 869
Alignment:
Q  172 aaaggcacaaaaattagcacttcaacattggcttgaagctgtaagttgcttttcttacattatttcattcaa 243  Q
    ||||||||||||||||| | | ||||| |||||||||||| |||||| |||||||||||||| |||||||||    
T  940 aaaggcacaaaaattagaattacaacaatggcttgaagctataagtttcttttcttacattagttcattcaa 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 6005467 - 6005395
Alignment:
Q  144 aggttggaaaaggtttatctaaggatgaaaaggcacaaaaattagcacttcaacattggcttgaagctgtaag 216  Q
    |||| |||||||| || | ||| ||||| || |||||||||||||| |||  |||||||||||||||||||||    
T  6005467 aggtgggaaaaggattgtgtaaagatgataaagcacaaaaattagctcttagacattggcttgaagctgtaag 6005395  T

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