View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_high_34 (Length: 226)

Name: NF13995_high_34
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_high_34
NF13995_high_34
[»] chr2 (5 HSPs)
chr2 (13-226)||(7746318-7746531)
chr2 (7-226)||(7711061-7711280)
chr2 (13-226)||(7733371-7733584)
chr2 (13-226)||(7725949-7726162)
chr2 (8-226)||(7699023-7699256)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 7746318 - 7746531
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  7746318 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaaaactaccaag 7746417  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7746418 tttgtttgaagatggtaaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcct 7746517  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7746518 aatatacctttact 7746531  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 7711280 - 7711061
Alignment:
Q  7 cagtagatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagct 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |  ||    
T  7711280 cagtaaatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccacctatgaatatact 7711181  T
Q  107 accaagtttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgca 206  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  7711180 accaagtttgtttgaagatggtaaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgca 7711081  T
Q  207 aggcctaatatacctttact 226  Q
    ||||||||||||||||||||    
T  7711080 aggcctaatatacctttact 7711061  T

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Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 7733584 - 7733371
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||| ||||||| ||||||||   ||||||||| |||||||| ||    ||||  ||||||||| |||||||  ||||||||    
T  7733584 atattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaagactaccaag 7733485  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
     |||||||||||||||||||| ||| ||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7733484 attgtttgaagatggtaaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcct 7733385  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7733384 aatatacctttact 7733371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 7726162 - 7725949
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||| ||||||| ||||||||   ||||||||| |||||||| ||    ||||  ||||||||| || ||||  ||||||||    
T  7726162 atattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaataaaaagactaccaag 7726063  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
     |||||||||||||||||||| ||| ||||||||||||||| |||    |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7726062 attgtttgaagatggtaaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcct 7725963  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7725962 aatatacctttact 7725949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 7699256 - 7699023
Alignment:
Q  8 agtagatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggca----aagttagat--ggtaccccacccatgaaa 101  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  ||||||||| |||||||  |    || || | |  |||| |||||| |||||     
T  7699256 agtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaagaactttgttggggtatcccaccaatgaag 7699157  T
Q  102 aagctaccaagt------ttgtttgaagatggtaaacagagaacaaacttgttaagaattttttg---cggagctaatgaaagctgttttggtgatgaaa 192  Q
    | ||||||||||      |||||||||||||||||||| ||| |||| |||||| |||  || ||    | || | |||||||||||||||||  |||||    
T  7699156 aggctaccaagtcctttcttgtttgaagatggtaaacaaagagcaaatttgttaggaagcttatgagaagaagatgatgaaagctgttttggtagtgaaa 7699057  T
Q  193 gtggtgttcttgcaaggcctaatatacctttact 226  Q
    ||  ||||||||||||||||||||| ||||||||    
T  7699056 gttttgttcttgcaaggcctaatatccctttact 7699023  T

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