View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_high_5 (Length: 605)

Name: NF13995_high_5
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_high_5
NF13995_high_5
[»] chr8 (4 HSPs)
chr8 (34-224)||(2446002-2446192)
chr8 (288-523)||(2445704-2445939)
chr8 (534-597)||(2445053-2445116)
chr8 (191-224)||(8448082-8448115)
[»] chr3 (2 HSPs)
chr3 (129-210)||(31750973-31751052)
chr3 (145-216)||(35220585-35220655)
[»] chr7 (1 HSPs)
chr7 (163-224)||(44533742-44533803)
[»] chr1 (1 HSPs)
chr1 (130-162)||(16087051-16087083)
[»] chr2 (1 HSPs)
chr2 (126-157)||(9253195-9253226)
[»] chr6 (1 HSPs)
chr6 (128-210)||(34493613-34493695)
[»] chr5 (1 HSPs)
chr5 (187-224)||(25876209-25876246)
[»] chr4 (1 HSPs)
chr4 (130-158)||(23963051-23963079)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 2446192 - 2446002
Alignment:
Q  34 agttcaattacttgactttgaagttaggtatatttatgtaagcttcaacgactaatctctcaagtctgattaaatggaccatcaagtaactcatgcttga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2446192 agttcaattacttgactttgaagttaggtatatttatgtaagcttcaacgactaatctctcaagtctgattaaatggaccatcaagcaactcatgcttga 2446093  T
Q  134 aaattcatatgcaaatgaaccaaaatgatgtgaaaaattagataagtgacaaaatcgttatctaaaattaagttaagcgacgacgagtgta 224  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2446092 aaattcatatgcaaatgaactaaaatgatgtgaaaaattagataagtgacaaaatcgttatctgaaattaagttaagcgacgacgagtgta 2446002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 288 - 523
Target Start/End: Complemental strand, 2445939 - 2445704
Alignment:
Q  288 agaataattttgtgaatcagctcttttcatcattctcctacaaaatgacaaaatgacttataatttaatttagagtagttaagagttagttaatagaatt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  2445939 agaataattttgtgaatcagctcttttcatcattctcctacaaaatgac--------ttataatttaatttagagtagttaagagttagttaatagaatt 2445848  T
Q  388 tgcta--------ttaagatttgttatttttggtatatccttagaaagtctttaataaccctcgattggcaaggggaagatatctttgaaaatttaaatc 479  Q
    |||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2445847 tgctaaatggttgttaagatttgttatttttggtatattcttagaaagtctttaataaccctcgattggcaaggggaagatagctttgaaaatttaaatc 2445748  T
Q  480 atgactggagaattatcttcatggaaaacctttcgatctctata 523  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  2445747 atgactggagaattatcttcatggaaaacctttcaatctctata 2445704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 2445116 - 2445053
Alignment:
Q  534 gtctgaagacactcgttaatattttctttaaataaaaagaaaaattaaattattttttctttca 597  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2445116 gtctggagacactcgtttatattttctttaaataaaaagaaaaattaaattattttttctttca 2445053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 8448082 - 8448115
Alignment:
Q  191 ttatctaaaattaagttaagcgacgacgagtgta 224  Q
    |||||||||||||||||||| |||||||||||||    
T  8448082 ttatctaaaattaagttaagagacgacgagtgta 8448115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 31750973 - 31751052
Alignment:
Q  129 cttgaaaattcatatgcaaatgaaccaaaatgatgtgaaaaattagataagtgacaaaatcgttatctaaaattaagttaag 210  Q
    ||||||||||||||||||||| || |||||||||||| ||||  | |||| |||||||||| |||  |||||||||||||||    
T  31750973 cttgaaaattcatatgcaaattaatcaaaatgatgtgcaaaa--aaataaatgacaaaatcattaggtaaaattaagttaag 31751052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 35220655 - 35220585
Alignment:
Q  145 caaatgaaccaaaatgatgtgaaaaattagataagtgacaaaatcgttatctaaaattaagttaagcgacga 216  Q
    |||| |||| ||||||||||||||||  |||||| |||| |||| ||||||| ||||||||||||| |||||    
T  35220655 caaaagaacgaaaatgatgtgaaaaaa-agataaatgacgaaattgttatctgaaattaagttaagggacga 35220585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 44533742 - 44533803
Alignment:
Q  163 gtgaaaaattagataagtgacaaaatcgttatctaaaattaagttaagcgacgacgagtgta 224  Q
    ||||||||  ||||||  |||||||| ||||||| ||||||||||||| |||||||||||||    
T  44533742 gtgaaaaaaaagataaaggacaaaatggttatctgaaattaagttaagggacgacgagtgta 44533803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 16087083 - 16087051
Alignment:
Q  130 ttgaaaattcatatgcaaatgaaccaaaatgat 162  Q
    |||||||||||||||||||||||||||||||||    
T  16087083 ttgaaaattcatatgcaaatgaaccaaaatgat 16087051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 9253226 - 9253195
Alignment:
Q  126 atgcttgaaaattcatatgcaaatgaaccaaa 157  Q
    ||||||||||||||||||||||||||||||||    
T  9253226 atgcttgaaaattcatatgcaaatgaaccaaa 9253195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 34493695 - 34493613
Alignment:
Q  128 gcttgaaaattcatatgcaaatgaaccaaaatgatgtgaaaaattagataagtgacaaaatcgttatctaaaattaagttaag 210  Q
    |||||||||| ||||| |||| | ||||||| || ||||||||| | ||||  |||  ||||||||| |||||||||||||||    
T  34493695 gcttgaaaatccatattcaaacggaccaaaaagaagtgaaaaataaaataaaagacggaatcgttatttaaaattaagttaag 34493613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 25876246 - 25876209
Alignment:
Q  187 atcgttatctaaaattaagttaagcgacgacgagtgta 224  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  25876246 atcgttatctgaaattaagttaagggacgacgagtgta 25876209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 23963051 - 23963079
Alignment:
Q  130 ttgaaaattcatatgcaaatgaaccaaaa 158  Q
    |||||||||||||||||||||||||||||    
T  23963051 ttgaaaattcatatgcaaatgaaccaaaa 23963079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University