View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_high_8 (Length: 522)
Name: NF13995_high_8
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 2619370 - 2618863
Alignment:
| Q |
1 |
agccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619370 |
agccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaatc |
2619271 |
T |
|
| Q |
101 |
aaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacatctttaaggcctaatctcaacgtttcagaaacaatgcgtgagattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619270 |
aaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacatctttaaggcctaatctcaacgtttcagaaacaatgcgtgagattc |
2619171 |
T |
|
| Q |
201 |
taatagctgaacggtggccttgtttgtttgtgtatggaaaatttgatgtgtcggttgagattttcaccggtggtagaccttcgtttcgatttgttttcac |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2619170 |
taatagcggaacggtggccttgtttgtttgtgtatggaaaatttgatgtgtcggttgagattttcaccggtggtagaccttcgtttggatttgttttcac |
2619071 |
T |
|
| Q |
301 |
attgtcgtccatccacactattcctctcattttcttctcattgtacctgtttacaccaa-aaaatatataattagtcgaatcatgtattgaccaattgac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2619070 |
gttgtcgtccatccacactattcctctcattttcttctcattgtacctgtttacaccaaaaaaatatataattagtcgaatcatgtattgaccaattgac |
2618971 |
T |
|
| Q |
400 |
taaagtggaatcaactgatgcaaaatcagtaccatagttttatgtagttctttctttgttcccaaagttttgatgaggctgcaattccgaacactacatg |
499 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2618970 |
taaagtggaatcaactgatgcaaaatcagtaccatagttttatgtagttctttctttgttcccaaagttttgatgaggctgcaattccaaacactacatg |
2618871 |
T |
|
| Q |
500 |
ccggagct |
507 |
Q |
| |
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|||||||| |
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|
| T |
2618870 |
ccggagct |
2618863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 11092083 - 11091929
Alignment:
| Q |
1 |
agccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaatc |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||| || ||||| || ||||||||||| || |||||||| ||| | |
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|
| T |
11092083 |
agccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgatcatatttcttcaaaacattaacc |
11091984 |
T |
|
| Q |
101 |
aaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacat |
155 |
Q |
| |
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||||| | | ||||| | || || ||||| ||||| |||||||||||||||| |
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|
| T |
11091983 |
aaattctcagcaacaaaaaatgtatcatcatcacccatcacaaaccacctcacat |
11091929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41319860 - 41319937
Alignment:
| Q |
1 |
agccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatc |
78 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| || |||||||| ||||| || ||||| || |||||||| |
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|
| T |
41319860 |
agccataccataggaaaagaaaatattctgcaaatgactttcagataaacttccaatgtaataaaattgattatgatc |
41319937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 30748947 - 30748907
Alignment:
| Q |
115 |
aaacaccgtgtcgtcatctcccattacaaaccacctcacat |
155 |
Q |
| |
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||||||||| || ||||||||||||||||||||||| |||| |
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|
| T |
30748947 |
aaacaccgtatcatcatctcccattacaaaccacctaacat |
30748907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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