View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_high_9 (Length: 480)

Name: NF13995_high_9
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_high_9
NF13995_high_9
[»] chr4 (2 HSPs)
chr4 (11-466)||(39340596-39341044)
chr4 (252-300)||(31804620-31804668)
[»] chr7 (1 HSPs)
chr7 (247-340)||(22195804-22195897)
[»] chr1 (1 HSPs)
chr1 (247-306)||(28083940-28083999)
[»] chr6 (3 HSPs)
chr6 (247-305)||(16540082-16540140)
chr6 (247-284)||(4910904-4910941)
chr6 (184-236)||(29338575-29338627)
[»] chr3 (2 HSPs)
chr3 (245-282)||(40339224-40339261)
chr3 (185-249)||(43661881-43661945)
[»] chr8 (1 HSPs)
chr8 (248-284)||(30098906-30098942)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 39341044 - 39340596
Alignment:
Q  11 tgaatctatgatgctatcaattatgttacatctatcttggccgtatttacacaagatgcattccttattcccattaaacacacacaaaacttgctaagat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39341044 tgaatctatgatgctatcaattatgttacatctatcttggccgtatttacacaagatgcattccttattcccattaagcacacacaaaacttgctaagat 39340945  T
Q  111 acaaaggtgcaaatgtgtttggttgtgaagcgcggaagaattgannnnnnnnaaaaatgattttcatcaaaaagatttatgttttgatatattcgtgtaa 210  Q
    |||||||||||||||||||||||||||| |  || |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39340944 acaaaggtgcaaatgtgtttggttgtgacggacgcaagaattgattttgtttaaaaatgattttcatcaaaaagatttatgttttgatatattcgtgtaa 39340845  T
Q  211 tagtgaattgaattatagatttatgtgtgtaaatcaaaaagctacaaattatagcttcaagtaaaatcaattttgaaaacacaatcaattatactcaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||||||||||| |||    
T  39340844 tagtgaattgaattatagatttatgtgtgtaaatcaaaaagctacaaattatagctt-aagtaaaatcaattccggaaacacaatcaattatactcgaca 39340746  T
Q  311 gtcatcaaatatgttaaaattaattttacatcttctgagtcaattatgatcctctagaattgaaaccaaaaatacacttattataaattttcttaattct 410  Q
    | ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  39340745 gccatcaaatatgttaaaattaattctacatcttcagagtcaattatgatcctctag------aaccaaaaatacacttattataaattttcttaattct 39340652  T
Q  411 catctatagagaccgaagtagtattaaattgtaactagtatagctcagtaagattt 466  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39340651 catttatagagaccgtagtagtattaaattgtaactagtatagctcagtaagattt 39340596  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 31804668 - 31804620
Alignment:
Q  252 ctacaaattatagcttcaagtaaaatcaattttgaaaacacaatcaatt 300  Q
    ||||||||| || ||||||||||||||||||||||||||| ||| ||||    
T  31804668 ctacaaattttaacttcaagtaaaatcaattttgaaaacaaaattaatt 31804620  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 22195897 - 22195804
Alignment:
Q  247 aaaagctacaaattatagcttcaagtaaaatcaattttgaaaacacaatcaattatactcaacagtcatcaaatatgttaaaattaattttaca 340  Q
    ||||| ||||||| ||||||| ||||||||||||||||||  ||| |||||||| ||||| ||| | |||||| |||| | |||||||||||||    
T  22195897 aaaagttacaaatcatagcttaaagtaaaatcaattttgaggacataatcaattctactcgacaataatcaaacatgtcataattaattttaca 22195804  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 28083940 - 28083999
Alignment:
Q  247 aaaagctacaaattatagcttcaagtaaaatcaattttgaaaacacaatcaattatactc 306  Q
    |||||||||||||| |||||||||||| ||||||||  ||| ||| |||||||| |||||    
T  28083940 aaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactc 28083999  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 16540140 - 16540082
Alignment:
Q  247 aaaagctacaaattatagcttcaagtaaaatcaattttgaaaacacaatcaattatact 305  Q
    |||||||||||||  |||||||||||| ||||||||||| | ||| |||||||| ||||    
T  16540140 aaaagctacaaatcctagcttcaagtagaatcaattttggagacagaatcaattttact 16540082  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 4910941 - 4910904
Alignment:
Q  247 aaaagctacaaattatagcttcaagtaaaatcaatttt 284  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  4910941 aaaagctacaaatcatagcttcaagtagaatcaatttt 4910904  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 29338575 - 29338627
Alignment:
Q  184 gatttatgttttgatatattcgtgtaatagtgaattgaattatagatttatgt 236  Q
    ||||||||||| ||||||||  ||||| |||||||||||||| | ||||||||    
T  29338575 gatttatgtttggatatatttatgtaaaagtgaattgaattaaaaatttatgt 29338627  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 40339261 - 40339224
Alignment:
Q  245 caaaaagctacaaattatagcttcaagtaaaatcaatt 282  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  40339261 caaaaagctacaaattgtagcttcaagtagaatcaatt 40339224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 43661945 - 43661881
Alignment:
Q  185 atttatgttttgatatattcgtgtaatagtgaattgaattatagatttatgtgtgtaaatcaaaa 249  Q
    ||||||||||| ||| |||| ||||| ||||| |||||  ||| ||||||||||| |||||||||    
T  43661945 atttatgtttttatacattcatgtaaaagtgagttgaacaatacatttatgtgtgaaaatcaaaa 43661881  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 30098942 - 30098906
Alignment:
Q  248 aaagctacaaattatagcttcaagtaaaatcaatttt 284  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  30098942 aaagctacaaattctagcttcaaataaaatcaatttt 30098906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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