View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_10 (Length: 477)
Name: NF13995_low_10
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 22 - 361
Target Start/End: Complemental strand, 46751816 - 46751477
Alignment:
| Q |
22 |
aagaaagacagcaggtggtgggaagaagacaagtcatttttaaaacggttaccaaacatatacaactacattctcaaaattcaattcctttcatacaaaa |
121 |
Q |
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| T |
46751816 |
aagaaagacagcaggtggtgggaagaagacaagtcaattttaaaacggttaccaaacatatacaactacattctcaaaattcaattcctttcatacaaaa |
46751717 |
T |
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| Q |
122 |
acaaaacattacaagacatggatataagagcaaaagtatatgacaactctcaatgccaacaaattatcatactccatagtgaatcagactgcgatgagca |
221 |
Q |
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| T |
46751716 |
acaaaacattacaagacatggatataagagcaaaagtatatgacaactctcaatgccaacaaattatcacactccatagtgaatcagactgcgatgagcc |
46751617 |
T |
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| Q |
222 |
ttcagttcgatggtaagagtttgattttattttattatatacgagataatcgtaaaatgattattagttagtattgtcgttattaataataatttta--- |
318 |
Q |
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| T |
46751616 |
gtcagttcgatggtaagagtttgattt-----tattatatacgagataatcgtaaaatgattattagttagtattgtcgttattaataataattttaatt |
46751522 |
T |
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| Q |
319 |
--annnnnnnncatcccggcctttaaaaaatgtgattgagaatgg |
361 |
Q |
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| T |
46751521 |
ttaatttttttcatcccggcctttaaaaaatgtgattgagaatgg |
46751477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 463
Target Start/End: Complemental strand, 46751404 - 46751374
Alignment:
| Q |
433 |
ggacaatgtttgtaatactgacagtcttaca |
463 |
Q |
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| T |
46751404 |
ggacaatgtttgtaatactgacagtcttaca |
46751374 |
T |
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