View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_12 (Length: 452)
Name: NF13995_low_12
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_12 |
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| [»] scaffold0340 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 50288741 - 50289171
Alignment:
| Q |
17 |
aagaggcatcgccacacttccaccaaaggggtatgtattcatcattctcctctgatttttcaaacgattgatctattttgtaatgagattttaattaatt |
116 |
Q |
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| T |
50288741 |
aagaggcatcgccacacttccaccaaaggggtatgtattcatcattctcctctgatttttcaaacgattgatctattttgtaatgagattttaattaatt |
50288840 |
T |
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| Q |
117 |
gttcattgtttttaattgctgtagatggatccaaagtttttgaggaaccagaggtacgcaaggaagcataacaagaaaaatggtgaaatcgccaccgaag |
216 |
Q |
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| T |
50288841 |
gttcattgtttttaattgctgtagatggatccaaagtttttgaggaaccagaggtacgcaaggaagcataacaagaaaaatggtgaaatcgccaccgaag |
50288940 |
T |
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| Q |
217 |
aagagtaaagtgtcgatctctctctaatgggtctttttgtattttgaatcttagatagatttccaattcgtgctatgtatggtttacttcaattctattt |
316 |
Q |
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| T |
50288941 |
aagagtaaagtgtcgatctctctctaatggggctttttgtattttgaatcttagatagatttctaattcgtgctatgtatggtttatttcaattctattt |
50289040 |
T |
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| Q |
317 |
tgatggattatttaattaagtgaaaatgcagtactctgttagcatttttgggtttttatttatgaata-taaaactgctatagtattaagtatatcaatt |
415 |
Q |
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| T |
50289041 |
tgatggattatttaattaagtgaaaatgcagtactctgttagcatttttgggtttttatttatgaatattaaaactgctatagaattaagtatatcaatt |
50289140 |
T |
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| Q |
416 |
ctgctgtttatgatgttgatgcataatgtga |
446 |
Q |
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| T |
50289141 |
ctgctgtttatgatgttgatgcataatgtga |
50289171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 50284534 - 50284633
Alignment:
| Q |
138 |
tagatggatccaaagtttttgaggaaccagaggtacgcaaggaagcataacaagaaaaatggtgaaatcgccaccgaagaagagtaaagtgtcgatctct |
237 |
Q |
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| T |
50284534 |
tagatggatccaaagtttttgaggaaccagaggtatgcaaggaagcacaacaagaaaaatggggaagtcgcttctgctgaagagtaaagtgttgatctct |
50284633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 50284394 - 50284433
Alignment:
| Q |
17 |
aagaggcatcgccacacttccaccaaaggggtatgtattc |
56 |
Q |
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| T |
50284394 |
aagaggcatcgccacacttccaccaagggggtatgtattc |
50284433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 3404 - 3486
Alignment:
| Q |
319 |
atggattatttaattaagtgaaaatgcagtactctgttagcatttttgggtttttatttatgaata-taaaactgctatagta |
400 |
Q |
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| T |
3404 |
atggattatttaattaagagaaaatgcagtactctgttagcatttttgggtttttatttctgaatattaaaactgctatagta |
3486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 3513 - 3545
Alignment:
| Q |
405 |
gtatatcaattctgctgtttatgatgttgatgc |
437 |
Q |
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| T |
3513 |
gtatatcaattctgctgtttatgttgttgatgc |
3545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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