View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_13 (Length: 433)
Name: NF13995_low_13
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 3124974 - 3125383
Alignment:
| Q |
18 |
agaagaaacgtgaatctttcaaactttctctgtatcataataata---gacatagtaatattccttcaccgggtcagaaaacgtaacaaacactttacac |
114 |
Q |
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| T |
3124974 |
agaagaaacgtgaatctttcaaactttttctgtatcataataataatagacatagtaatattccttcaccgggtcagaaaacgtaacaaacactttacac |
3125073 |
T |
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| Q |
115 |
ggacagttaaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaa--tagtgtgcatacatgaaattccagaaatttacagc |
212 |
Q |
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| T |
3125074 |
ggacagttaaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaaaatagtgtgcatacatgaaattccagaaatttacagc |
3125173 |
T |
|
| Q |
213 |
aaccagct--tttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactattatatctcttggtgcatctcattggag |
310 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125174 |
aaccagctcttttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactattatatctcttggtgcatctcattggag |
3125273 |
T |
|
| Q |
311 |
ggtctacagtacactctatcagcaatcagcaaatagagtaattagtacatatattataacatatagttgtgtgttaccagctggtaattaggaacaaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125274 |
ggtctacagtacactctatcagcaatcagcaaatagagtaattagtac--atattataacatatagttgtgtgttaccagctggtaattaggaacaaaat |
3125371 |
T |
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| Q |
411 |
aatatgatgatg |
422 |
Q |
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|||||||||||| |
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| T |
3125372 |
aatatgatgatg |
3125383 |
T |
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