View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_low_14 (Length: 433)

Name: NF13995_low_14
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_low_14
NF13995_low_14
[»] chr3 (28 HSPs)
chr3 (228-413)||(20922725-20922910)
chr3 (228-413)||(35612970-35613155)
chr3 (228-358)||(25313421-25313551)
chr3 (228-408)||(49794914-49795092)
chr3 (228-358)||(50834064-50834194)
chr3 (228-358)||(50841659-50841789)
chr3 (237-413)||(48905586-48905761)
chr3 (228-352)||(46320491-46320615)
chr3 (228-347)||(22515696-22515815)
chr3 (228-419)||(23026230-23026422)
chr3 (237-409)||(54748056-54748227)
chr3 (237-413)||(9663858-9664030)
chr3 (237-358)||(25095993-25096114)
chr3 (237-358)||(26848166-26848287)
chr3 (268-354)||(33280330-33280416)
chr3 (51-88)||(20923060-20923097)
chr3 (13-50)||(20923003-20923040)
chr3 (171-207)||(25096143-25096179)
chr3 (171-207)||(35613176-35613212)
chr3 (171-207)||(46320434-46320470)
chr3 (171-207)||(54747991-54748027)
chr3 (378-413)||(22515847-22515882)
chr3 (173-207)||(25313366-25313400)
chr3 (173-207)||(49795115-49795149)
chr3 (171-207)||(23026443-23026479)
chr3 (171-207)||(26848316-26848352)
chr3 (171-207)||(50834007-50834043)
chr3 (171-207)||(50841810-50841846)
[»] chr6 (5 HSPs)
chr6 (228-420)||(1365702-1365894)
chr6 (228-419)||(7243362-7243552)
chr6 (228-358)||(24338018-24338148)
chr6 (171-207)||(1365645-1365681)
chr6 (171-207)||(24338169-24338205)
[»] chr2 (29 HSPs)
chr2 (228-413)||(39778602-39778788)
chr2 (228-413)||(10728245-10728429)
chr2 (228-413)||(19926739-19926921)
chr2 (228-413)||(10700176-10700360)
chr2 (228-413)||(25186995-25187179)
chr2 (228-419)||(28831015-28831204)
chr2 (237-413)||(7105619-7105794)
chr2 (228-355)||(36191585-36191711)
chr2 (237-410)||(10448784-10448956)
chr2 (237-358)||(11964216-11964337)
chr2 (237-356)||(22066384-22066503)
chr2 (237-411)||(41435563-41435736)
chr2 (237-358)||(42993812-42993933)
chr2 (237-413)||(13693482-13693657)
chr2 (237-355)||(21345090-21345206)
chr2 (228-310)||(41462723-41462805)
chr2 (284-358)||(16621981-16622053)
chr2 (283-358)||(45695641-45695715)
chr2 (171-208)||(19926941-19926978)
chr2 (171-207)||(10448719-10448755)
chr2 (171-207)||(10728450-10728486)
chr2 (371-413)||(36191526-36191568)
chr2 (171-208)||(39778808-39778845)
chr2 (171-207)||(11964151-11964187)
chr2 (171-207)||(13693686-13693722)
chr2 (171-207)||(21345234-21345270)
chr2 (171-207)||(22066532-22066568)
chr2 (171-207)||(41435765-41435801)
chr2 (171-207)||(41462666-41462702)
[»] chr1 (32 HSPs)
chr1 (228-413)||(16130464-16130650)
chr1 (228-358)||(16129970-16130100)
chr1 (228-413)||(40988020-40988203)
chr1 (228-352)||(9411785-9411909)
chr1 (238-413)||(4813703-4813878)
chr1 (228-413)||(27654663-27654845)
chr1 (228-355)||(1553773-1553900)
chr1 (228-413)||(34546707-34546890)
chr1 (237-358)||(5800443-5800564)
chr1 (237-355)||(27332948-27333066)
chr1 (259-409)||(27846423-27846573)
chr1 (243-413)||(35050257-35050426)
chr1 (259-413)||(23933270-23933424)
chr1 (259-349)||(36834323-36834411)
chr1 (264-358)||(45192579-45192673)
chr1 (262-347)||(13879071-13879156)
chr1 (237-358)||(30222758-30222879)
chr1 (265-358)||(11907972-11908063)
chr1 (290-358)||(35428419-35428491)
chr1 (171-210)||(40988222-40988261)
chr1 (371-413)||(16129910-16129952)
chr1 (171-208)||(16130120-16130157)
chr1 (171-208)||(16130670-16130707)
chr1 (237-294)||(35121236-35121293)
chr1 (171-207)||(27654606-27654642)
chr1 (289-355)||(41957257-41957323)
chr1 (171-208)||(13879198-13879235)
chr1 (171-208)||(23933475-23933512)
chr1 (171-203)||(1553717-1553749)
chr1 (171-207)||(27333095-27333131)
chr1 (298-358)||(38859015-38859074)
chr1 (171-207)||(45192729-45192765)
[»] chr7 (14 HSPs)
chr7 (228-413)||(23319928-23320112)
chr7 (171-413)||(48394114-48394354)
chr7 (236-413)||(41850966-41851143)
chr7 (228-413)||(48390272-48390456)
chr7 (237-413)||(7568131-7568306)
chr7 (228-358)||(18674561-18674690)
chr7 (237-358)||(24989779-24989900)
chr7 (237-347)||(8417724-8417834)
chr7 (237-358)||(45062521-45062642)
chr7 (266-322)||(965166-965222)
chr7 (171-207)||(24989714-24989750)
chr7 (171-210)||(48390474-48390513)
chr7 (171-207)||(8417659-8417695)
chr7 (171-207)||(18674503-18674539)
[»] chr8 (14 HSPs)
chr8 (228-419)||(32305765-32305955)
chr8 (228-419)||(35634737-35634927)
chr8 (228-419)||(42569959-42570151)
chr8 (237-413)||(8669799-8669974)
chr8 (237-413)||(8106959-8107134)
chr8 (237-413)||(13882151-13882325)
chr8 (237-413)||(29226342-29226516)
chr8 (259-347)||(37533854-37533942)
chr8 (261-344)||(36741715-36741801)
chr8 (228-356)||(17855405-17855533)
chr8 (288-340)||(31598688-31598740)
chr8 (171-208)||(32305708-32305745)
chr8 (371-412)||(45177557-45177598)
chr8 (286-326)||(32026755-32026795)
[»] chr4 (22 HSPs)
chr4 (228-413)||(26877220-26877406)
chr4 (228-413)||(782850-783034)
chr4 (237-413)||(30537583-30537758)
chr4 (228-413)||(27627810-27627993)
chr4 (228-413)||(36187376-36187560)
chr4 (237-356)||(50150325-50150444)
chr4 (237-413)||(43034082-43034257)
chr4 (237-413)||(3067793-3067967)
chr4 (237-350)||(25934406-25934519)
chr4 (241-419)||(33313300-33313478)
chr4 (262-354)||(56551485-56551573)
chr4 (171-207)||(26877163-26877199)
chr4 (171-206)||(27627753-27627788)
chr4 (171-210)||(36187319-36187358)
chr4 (268-330)||(44538447-44538509)
chr4 (370-419)||(25934544-25934593)
chr4 (171-204)||(50150476-50150509)
chr4 (171-207)||(782793-782829)
chr4 (371-419)||(22651799-22651847)
chr4 (171-207)||(25934341-25934377)
chr4 (268-343)||(29989703-29989779)
chr4 (171-207)||(43034286-43034322)
[»] scaffold0067 (1 HSPs)
scaffold0067 (228-413)||(6760-6946)
[»] chr5 (15 HSPs)
chr5 (228-352)||(24868524-24868648)
chr5 (237-413)||(40385186-40385362)
chr5 (237-358)||(33314394-33314515)
chr5 (237-355)||(21262907-21263025)
chr5 (237-354)||(3097561-3097678)
chr5 (237-413)||(41174612-41174788)
chr5 (259-358)||(4237940-4238039)
chr5 (228-355)||(2934897-2935025)
chr5 (371-414)||(4238195-4238238)
chr5 (171-207)||(21263054-21263090)
chr5 (371-413)||(3097499-3097541)
chr5 (174-207)||(3097708-3097741)
chr5 (376-413)||(24868671-24868708)
chr5 (321-357)||(4238147-4238183)
chr5 (171-207)||(40385394-40385430)
[»] scaffold0008 (3 HSPs)
scaffold0008 (228-322)||(258358-258452)
scaffold0008 (376-413)||(258277-258314)
scaffold0008 (171-207)||(258473-258509)
[»] scaffold0057 (2 HSPs)
scaffold0057 (228-355)||(30467-30594)
scaffold0057 (284-355)||(30839-30906)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 20922910 - 20922725
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20922910 ataagaaatattgaccaagtttcaagtattcttgaagctaaatttcatttgtgctcttatttattatgagagagaatattaaaagtaagtaagttggtgg 20922811  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||| |||||||||||||| |||||||| |         ||||||||||||||||||||||||||||| |||||||||||||    
T  20922810 aataaaaaataattaatttagggatattcattgatttttttttaaatgtagaggtgtattaaatgaagataaatattttcaatgta 20922725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 35613155 - 35612970
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  35613155 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaaataagttggtgg 35613056  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||||||||||||||  |         ||||||||||||||||||||||||||||| |||||||||||||    
T  35613055 aataaagagtaattaatttaggggtattcatggaattttttttaaatgtagaggtgtattaaatgaagataactattttcaatgta 35612970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 25313421 - 25313551
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25313421 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 25313520  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||| | ||||||||||||||||||||||    
T  25313521 aataaagaataattaatttaggggtattcat 25313551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 228 - 408
Target Start/End: Complemental strand, 49795092 - 49794914
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||| ||||||| ||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  49795092 ataagaaatattgatcaagtttcaagtatg-ttgaagctaaatttcatttgtactcttatttattatgagagaaaatattaaaagtaagtaagttggtgg 49794994  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttca 408  Q
    |||||| ||||||||||| |||||||||||| ||         ||||||||||||||||||||||||||||| ||||||||    
T  49794993 aataaagagtaattaattaaggggtattcatgaaaaaaaatt-aaatgtagaggtgtattaaatgaagataactattttca 49794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 50834064 - 50834194
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  50834064 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaagtaagttggtgg 50834163  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||| ||||||||||||| ||||||||||    
T  50834164 aataaagagtaattaatttaagggtattcat 50834194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 50841789 - 50841659
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  50841789 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaagtaagttggtgg 50841690  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||| ||||||||||||| ||||||||||    
T  50841689 aataaagagtaattaatttaagggtattcat 50841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 48905761 - 48905586
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48905761 attgaccaagtttcaagtatgtttgaaggtaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagag 48905662  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| ||         |||||||||  |||||||||||||||| | |||||||||||||    
T  48905661 taattaatttaggggtattcatgaaattttttt-aaatgtagaaatgtattaaatgaagatgactattttcaatgta 48905586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 46320491 - 46320615
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||     
T  46320491 ataagaaatattgaccaagttttaagtatgtttgaagttaaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtaagttggtga 46320590  T
Q  328 aataaaaagtaattaatttaggggt 352  Q
    |||||| ||||||||||||||||||    
T  46320591 aataaagagtaattaatttaggggt 46320615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 22515696 - 22515815
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  22515696 ataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 22515795  T
Q  328 aataaaaagtaattaattta 347  Q
    |||||| |||||||||||||    
T  22515796 aataaagagtaattaattta 22515815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 228 - 419
Target Start/End: Complemental strand, 23026422 - 23026230
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||||||||||  || ||| ||||| | |||||| ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  23026422 ataagaaatattgataaaatttcaagtatgtttgaagttaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttggtgg 23026323  T
Q  328 aataaaaagtaattaatttaggggtattcatta-annnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||||| ||||||||||||||||| |||||| |           |||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  23026322 aataaagagtaattaatttaggggcattcatgatttttttttttaaatgtagagatgtattaaatgaagataactattttcaatgtatttctt 23026230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 409
Target Start/End: Original strand, 54748056 - 54748227
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||    
T  54748056 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagag 54748155  T
Q  337 taattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaa 409  Q
    ||||||||||| |||||||||| |||         ||||||||| ||||||||||||||||||| |||||||||    
T  54748156 taattaatttaagggtattcatataattttttt--aaatgtagaagtgtattaaatgaagataactattttcaa 54748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 9664030 - 9663858
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||| | | |||||| ||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||| ||    
T  9664030 attgaccaagtttcaag-atgtttgaaggtaaatttcatttgtgcccttatttattatgagaga--atattaaaagtaagtaagttggtggaataaagag 9663934  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| ||         |||||||||  |||||||||||||||| | |||||||||||||    
T  9663933 taattaatttaggggtattcatgaaattttttt-aaatgtagaaatgtattaaatgaagatgactattttcaatgta 9663858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 25096114 - 25095993
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||| ||| ||||| | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||    
T  25096114 attgatcaaatttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagag 25096015  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| ||||||||||    
T  25096014 taattaatttaagggtattcat 25095993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 26848287 - 26848166
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | ||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  26848287 attgatcaagtttcaagtatgtttgaagctaaatttcttttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 26848188  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| |||| |||||    
T  26848187 taattaatttaagggtgttcat 26848166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 33280416 - 33280330
Alignment:
Q  268 aatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtat 354  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||  |||  |||||| || |||| ||||| |||| ||||    
T  33280416 aatttcatttgtgttcttatttattacgagagagaatattaaaagtaagttggttattggaattaagagtagttaatataggagtat 33280330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 20923097 - 20923060
Alignment:
Q  51 gttattattgccaactcttataagctattaccacttgt 88  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20923097 gttattattgccaactcttataagctattaccacttgt 20923060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 20923040 - 20923003
Alignment:
Q  13 aatatattataaaggaaattactacagtcctcaaccaa 50  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20923040 aatatattataaaggaaatcactacagtcctcaaccaa 20923003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 25096179 - 25096143
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25096179 tactccctccggtcctttttattagaaacaaaagtga 25096143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 35613212 - 35613176
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  35613212 tactccctccggtcctttttattagaaacaaaagtga 35613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 46320434 - 46320470
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46320434 tactccctccggtcctttttattagaaacaaaagtga 46320470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 54747991 - 54748027
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  54747991 tactccctccggtcctttttattagaaacaaaagtga 54748027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 413
Target Start/End: Original strand, 22515847 - 22515882
Alignment:
Q  378 gaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| |||||||||||||    
T  22515847 gaggtgtattaaatgaagataactattttcaatgta 22515882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 25313366 - 25313400
Alignment:
Q  173 ctccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||| |||||||||||||||||||||||||||    
T  25313366 ctccctccggtcctttttattagaaacaaaagtga 25313400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 49795149 - 49795115
Alignment:
Q  173 ctccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||| |||||||||||||||||||||||||||    
T  49795149 ctccctccggtcctttttattagaaacaaaagtga 49795115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 23026479 - 23026443
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  23026479 tacttcctccggtcctttttattagaaacaaaagtga 23026443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 26848352 - 26848316
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  26848352 tactccctccggtcctttttattataaacaaaagtga 26848316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 50834007 - 50834043
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  50834007 tactccctccggtcctttttattaggaacaaaagtga 50834043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 50841846 - 50841810
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  50841846 tactccctccggtcctttttattaggaacaaaagtga 50841810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 228 - 420
Target Start/End: Original strand, 1365702 - 1365894
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1365702 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 1365801  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttcttg 420  Q
    |||||| ||||||||||||| ||||||||||  |         |||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  1365802 aataaagagtaattaatttaagggtattcatggaattttttgtaaatgtagagatgtattaaatgaagataactattttcaatgtatttcttg 1365894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 228 - 419
Target Start/End: Complemental strand, 7243552 - 7243362
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7243552 ataagaaatattgaccaagtttcaagtatgtttgaagttaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 7243453  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||||| | ||||||||||||||||||||||  |         ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7243452 aataaagaataattaatttaggggtattcatggatttttttt-aaatgtagaggtgtattaaatgaagataactattttcaatgtatttctt 7243362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 24338148 - 24338018
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24338148 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 24338049  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||| |||||||||||||||| |||||||    
T  24338048 aataaagagtaattaatttagggttattcat 24338018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 1365645 - 1365681
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1365645 tactccctccggtcctttttattagaaacaaaagtga 1365681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 24338205 - 24338169
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24338205 tactccctccggtcctttttattagaaacaaaagtga 24338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 39778788 - 39778602
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  39778788 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 39778689  T
Q  328 aataaaaagtaattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||| ||||||||||  ||         ||||||||||||||||||||||||||||| |||||||||||||    
T  39778688 aataaagagtaattaatttaagggtattcatggaatttttttttaaatgtagaggtgtattaaatgaagataactattttcaatgta 39778602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 10728429 - 10728245
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||||||||||| |||||| ||||| | ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  10728429 ataagaaatattgacaaagtttcaagtatgtttgaagctaaatttcatttatgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 10728330  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| |||||||||||||||||||||||| ||         ||||||||||||||||||| ||||||||| |||||||||||||    
T  10728329 aataaagagtaattaatttaggggtattcatgaatttttttt-aaatgtagaggtgtattaactgaagataactattttcaatgta 10728245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 19926921 - 19926739
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||    
T  19926921 ataagaaatattgaccaagttttaagtatgtttgaaactaaatttcatttgtgcccttatttattatgagaga--atattaaaagtaagtaagttggtgg 19926824  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| |||||||||||||||||||||| || |        |||| ||||||||||||||||||||||||| |||||||||||||    
T  19926823 aataaagagtaattaatttaggggtattc-ttgaagaagaaaaaaaagtagaggtgtattaaatgaagataaatattttcaatgta 19926739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 10700360 - 10700176
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||||||    
T  10700360 ataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaaataagttggtgg 10700261  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||||||||||||||  |         |||||||||||||||||||||||| |||| |||||||||||||    
T  10700260 aataaagagtaattaatttaggggtattcatggaattttttt-aaatgtagaggtgtattaaatgaaaataactattttcaatgta 10700176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 25186995 - 25187179
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25186995 ataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 25187094  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||| || ||||||||||||| || |||||||  |         ||||||||||||||||||||||||||||| |||||||||||||    
T  25187095 aattaagagtaattaatttaaggatattcatggaattttttt-aaatgtagaggtgtattaaatgaagataactattttcaatgta 25187179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 28831015 - 28831204
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||| ||||||||| | |||||| |||||||||||||||   ||||||||||||||||| |||||||||||||||||| ||||||     
T  28831015 ataagaaatattgaccaaattttaagtatgtttgaagttaaatttcatttgtgtccttatttattatgagagaaaatattaaaagtaagtaaattggtgc 28831114  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||||| |||||||||||||||||||||||| |         |||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  28831115 aataaagagtaattaatttaggggtattcatga--tttttttaaaacgtagaggtgtattaaatgaagataactattttcaatgtatttctt 28831204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 7105619 - 7105794
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  7105619 attgaccaagtttcaagtatgcttgaaggtaaatttcatttgtgcccttatttattatgagagaaaatattaaaagtaagtaagttggtggaataaagag 7105718  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| ||         |||||||||  |||||||||||||||| | |||||||||||||    
T  7105719 taattaatttaggggtattcatgaaaaaaattt-aaatgtagaaatgtattaaatgaagatgactattttcaatgta 7105794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 36191711 - 36191585
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||||||||||| |||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  36191711 ataagaaatattgactaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagtt-gtgg 36191613  T
Q  328 aataaaaagtaattaatttaggggtatt 355  Q
    |||||| |||||||||||||||||||||    
T  36191612 aataaagagtaattaatttaggggtatt 36191585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 237 - 410
Target Start/End: Original strand, 10448784 - 10448956
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  10448784 attgatcaagtttcaagtatgtttgaagttaaatttcatttgtgctcttattgattatgagagagaatattaaaagtaagtaagttgatggaataaatag 10448883  T
Q  337 taattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaat 410  Q
    ||||||||||| |||||||||| |||         ||||||||| ||||||||||||||||| | ||||||||||    
T  10448884 taattaatttaagggtattcatataactttttt--aaatgtagaagtgtattaaatgaagatgactattttcaat 10448956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 11964216 - 11964337
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  11964216 attgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 11964315  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| ||||||||||    
T  11964316 taattaatttaagggtattcat 11964337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 22066503 - 22066384
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | || ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  22066503 attgatcaagtttcaagtatgtttaaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagttagttgatggaataaaaag 22066404  T
Q  337 taattaatttaggggtattc 356  Q
    ||||||||||| ||||||||    
T  22066403 taattaatttaagggtattc 22066384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 411
Target Start/End: Complemental strand, 41435736 - 41435563
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||| ||||||| || |||||| ||    
T  41435736 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagatagaatattaaaagtaaataagttgatgaaataaagag 41435637  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatg 411  Q
    ||||||||||| |||||||||| ||         ||||||||| ||||||||||||||||| | |||||||||||    
T  41435636 taattaatttaagggtattcatgaaaaaaaatt-aaatgtagaagtgtattaaatgaagatgactattttcaatg 41435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 42993933 - 42993812
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||| ||| ||||| | |||||| ||||||||||||||||  |||||| ||||||||||||| ||||||||||| |||||| |||||||||| ||    
T  42993933 attgaccaaatttcaagtatgtttgaagataaatttcatttgtgcccttatttgttatgagagagaaaattaaaagtaaataagttagtggaataaagag 42993834  T
Q  337 taattaatttaggggtattcat 358  Q
     |||||||||||||||||||||    
T  42993833 gaattaatttaggggtattcat 42993812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 13693657 - 13693482
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | || ||| |||||||||||| ||   |||||||||||||||||||| ||||||||||| |||||| |||||||||| ||    
T  13693657 attgaccaagtttcaagtatgtttaaagataaatttcatttctgtccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagag 13693558  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
     ||||||||||||||||||||| ||         |||| |||| ||||||||||||||||| | |||||||||||||    
T  13693557 gaattaatttaggggtattcatgaatatttttt-aaatatagaagtgtattaaatgaagatgactattttcaatgta 13693482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 21345206 - 21345090
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||   ||||| ||| |||||||||||  ||||||||||||||||| ||||||||| ||    
T  21345206 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgtccttattgattgtgagagagaat--taaaagtaagtaagttgatggaataaagag 21345109  T
Q  337 taattaatttaggggtatt 355  Q
    ||||||||||| |||||||    
T  21345108 taattaatttaagggtatt 21345090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 41462723 - 41462805
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaa 310  Q
    ||||||||||||||||||||||||| || | |||||| ||||||||||||||||  |||||||||||||||||||||| ||||    
T  41462723 ataagaaatattgaccaagttttaaatatgtttgaagttaaatttcatttgtgcccttatttattatgagagagaataataaa 41462805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 16622053 - 16621981
Alignment:
Q  284 ttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||||||||||||||  ||||||||| ||||||||||||| |||  || |||||||||| |||||| ||||||    
T  16622053 ttatttattatgagaga--atattaaaaataagtaagttggtagaaataagagtaattaatataggggcattcat 16621981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 45695715 - 45695641
Alignment:
Q  283 tttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    ||||||||||||| |||||||| |||| ||||||||| ||||||| || ||||||||||||| || |||| |||||    
T  45695715 tttatttattatgggagagaat-ttaagagtaagtaaattggtgggatgaaaagtaattaatataagggtgttcat 45695641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 19926978 - 19926941
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  19926978 tactccctccggtcctttttattagaaacaaaagtgaa 19926941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 10448719 - 10448755
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10448719 tactccctccggtcctttttattagaaacaaaagtga 10448755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 10728486 - 10728450
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10728486 tactccctccggtcctttttattagaaacaaaagtga 10728450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 36191568 - 36191526
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  36191568 aaatatagaggtgtattaaataaagataactattttcaatgta 36191526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 39778845 - 39778808
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39778845 tactccctccggtcttttttattagaaacaaaagtgaa 39778808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 11964151 - 11964187
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  11964151 tactccctccggtcctttctattagaaacaaaagtga 11964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 13693722 - 13693686
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  13693722 tactctctccggtcctttttattagaaacaaaagtga 13693686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 21345270 - 21345234
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  21345270 tacttcctccggtcctttttattagaaacaaaagtga 21345234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 22066568 - 22066532
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| | |||||||||||||||||||||||||    
T  22066568 tactccctccgatcctttttattagaaacaaaagtga 22066532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 41435801 - 41435765
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  41435801 tactcgctccggtcctttttattagaaacaaaagtga 41435765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 41462666 - 41462702
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||||||||  ||||||||||||||||||||||||||    
T  41462666 tactccctccagtcctttttattagaaacaaaagtga 41462702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 16130650 - 16130464
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  16130650 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 16130551  T
Q  328 aataaaaagtaattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||| ||||||||||  |          ||||||||||||||||||||||||||||| |||||||||||||    
T  16130550 aataaaaagtaattaatttaagggtattcatggattttttttttaaatgtagaggtgtattaaatgaagataactattttcaatgta 16130464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 16130100 - 16129970
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  16130100 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 16130001  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||||||||||||||||||||||||||||    
T  16130000 aataaaaagtaattaatttaggggtattcat 16129970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 40988203 - 40988020
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||| ||    
T  40988203 ataagaaatattgaccaagttttaagtatgtttgaaactaaatttcatttgtgcccttatttattatgagaga--atattaaaagtaagtaagttggcgg 40988106  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||| |||||||||||||    
T  40988105 aataaagagtaattaatttaggggtattcattgaattttttttaaatgtagaggtgtattaaatgaagataactattttcaatgta 40988020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 9411785 - 9411909
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| |||||   |||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9411785 ataagaaatattgaccaagtttcaagtatatttgaagttaaatttcacttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 9411884  T
Q  328 aataaaaagtaattaatttaggggt 352  Q
    |||||| ||||||||||||||||||    
T  9411885 aataaagagtaattaatttaggggt 9411909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 238 - 413
Target Start/End: Complemental strand, 4813878 - 4813703
Alignment:
Q  238 ttgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagt 337  Q
    |||||||| ||||||||  ||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  4813878 ttgaccaatttttaagtgtgcttgaaactaaatttcatttgtgcccttatttattatgagaaggaatattaaaagtaagtaagttggtggaatgaaaagt 4813779  T
Q  338 aattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||  |||||||||  |         ||||| ||||||||||||||||||||||| |||||| ||||||    
T  4813778 aattaatttaaaggtattcatggaaaactatttaaatggagaggtgtattaaatgaagataactatttttaatgta 4813703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 27654663 - 27654845
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||| |||||||||||||   |||||| ||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||    
T  27654663 ataagaaatattgatcaagttttaagtatctttgaagttaaatttcatttgtgcccttatttattatgaga--gaatattaaaagtaagtaagttggtgg 27654760  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| |||||||||||||||||| || ||  |         |||| |||||||||||||||||||||| | |||||||||||||    
T  27654761 aataaagagtaattaatttaggggttttaatggaattttctt-aaatatagaggtgtattaaatgaagattactattttcaatgta 27654845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 1553773 - 1553900
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||| |||||| ||| ||| ||||| | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||    
T  1553773 ataagaagtattgatcaaatttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatgg 1553872  T
Q  328 aataaaaagtaattaatttaggggtatt 355  Q
    |||||| ||||||||||||| |||||||    
T  1553873 aataaagagtaattaatttaagggtatt 1553900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 34546707 - 34546890
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||| ||||||||| ||||||||||||| | |||||||||| |||||||| |||  ||||||||||||||| |  |||||||||||||||||||||||||    
T  34546707 ataaaaaatattgatcaagttttaagtatgtttgaagctaa-tttcatttctgcccttatttattatgagaaa--atattaaaagtaagtaagttggtgg 34546803  T
Q  328 aataaaaagtaattaatttaggggtattcattaa-nnnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| |||||||||||||||||||||||| ||          ||||||| ||||| ||||||||||||||| |||||||||||||    
T  34546804 aataaagagtaattaatttaggggtattcatgaattttttttttaaatgtaaaggtgcattaaatgaagataactattttcaatgta 34546890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 5800564 - 5800443
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||   |||||||||||||||||||| ||||||||||| |||||| |||||||||| ||    
T  5800564 attgaccaagtttcaagtatgtttgaagataaatttcatttgtgtccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagag 5800465  T
Q  337 taattaatttaggggtattcat 358  Q
     |||||||||||||||||||||    
T  5800464 aaattaatttaggggtattcat 5800443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 27333066 - 27332948
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| |  ||||| ||||||||||| |||||||||||||||||||||  ||||||||| ||    
T  27333066 attgatcaagttttaagtatgtttgaagctaaatttcatttgtacccttattgattatgagagaaaatattaaaagtaagtaagttaatggaataaagag 27332967  T
Q  337 taattaatttaggggtatt 355  Q
    ||||||||||| |||||||    
T  27332966 taattaatttaagggtatt 27332948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 259 - 409
Target Start/End: Original strand, 27846423 - 27846573
Alignment:
Q  259 ttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| || |||||||    
T  27846423 ttgaagttaaatttcatttgtacccttatttattatgagagataatattaaaagtaagtaagttggtggaatagatagtaattaatttaaggatattcat 27846522  T
Q  359 taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaa 409  Q
      |         ||||||||| ||||||||||||||||||| |||||||||    
T  27846523 ggaattgtttttaaatgtagaagtgtattaaatgaagataactattttcaa 27846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 413
Target Start/End: Complemental strand, 35050426 - 35050257
Alignment:
Q  243 caagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaatta 342  Q
    ||||||| ||||| |  |||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  35050426 caagtttcaagtatgtctgaagctaaatttcatttgtgtccttattgattatgagagagaatattaaaagtaagtaagttgatgaaataaagagtaatta 35050327  T
Q  343 atttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||| |||||| || ||          ||||||||| ||||||||||||||||| | |||||||||||||    
T  35050326 atttaagggtataca-tattttttttttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 35050257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 23933424 - 23933270
Alignment:
Q  259 ttgaagctaaatttcatttgtgcttttatttattatgagagagaatatt-aaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattca 357  Q
    |||||| ||||||||||||||||  |||||||||||  ||||||||||| |||| |||| |||||||| |||| || |||||||||||||||||||||||    
T  23933424 ttgaagttaaatttcatttgtgcccttatttattatatgagagaatattaaaaaataagaaagttggtagaatcaagagtaattaatttaggggtattca 23933325  T
Q  358 ttaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    | ||         |||||||||||| ||||||| ||| ||||||||||||||||||    
T  23933324 tgaaaaaaaatt-aaatgtagaggtatattaaaagaaaataattattttcaatgta 23933270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 36834323 - 36834411
Alignment:
Q  259 ttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttagg 349  Q
    ||||||||||||||||||||| |  ||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  36834323 ttgaagctaaatttcatttgtacccttatttattataagag--aatattaaaagtaagtaagttggtggaataaagagtaattaatttagg 36834411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 264 - 358
Target Start/End: Complemental strand, 45192673 - 45192579
Alignment:
Q  264 gctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||| |||||||||| | ||||| ||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  45192673 gctaaaattcatttgtgttcttattaattatgagacagaatattaaaaataagtaagttgatggaataaagagtaattaatttaagggtattcat 45192579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 13879156 - 13879071
Alignment:
Q  262 aagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaattta 347  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||| ||||| ||||||||||||| ||| |||||||||||||    
T  13879156 aagctaaatttcatttgtgcccttatttattatgagatagaatattaatagtaaataagttggtggaagaaagagtaattaattta 13879071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 30222758 - 30222879
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | |||| |||||| |||||||||| | ||||| ||||||| |||||||||||||||||||||||||| |||| |||| ||    
T  30222758 attgatcaagtttcaaatatgtttgatgctaaaattcatttgtgttcttattgattatgaaagagaatattaaaagtaagtaagttgatggattaaagag 30222857  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| || |||||||    
T  30222858 taattaatttaaggatattcat 30222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 358
Target Start/End: Original strand, 11907972 - 11908063
Alignment:
Q  265 ctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||| ||| |||||||||||||| || |||||||||| ||  |||||||||    
T  11907972 ctaaatttcatttgtgtctttatttattatgagagag--tattaaaaataaataagttggtggaatcaagagtaattaatgtaaaggtattcat 11908063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 35428419 - 35428491
Alignment:
Q  290 attatgagagagaatattaaaagtaagtaag----ttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||||||||||| ||||||||||||||||    ||| ||||||||| ||||||||||||| ||||||||||    
T  35428419 attatgagagagaaaattaaaagtaagtaagttgattgatggaataaagagtaattaatttaagggtattcat 35428491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 40988261 - 40988222
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaatt 210  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40988261 tactccctccggtcctttttattagaaacaaaagtgaatt 40988222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 16129952 - 16129910
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  16129952 aaatgtaaaggtgtattaaatgaagataactattttcaatgta 16129910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 16130157 - 16130120
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16130157 tactccctccggtcctttttattagaaacaaaagtgaa 16130120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 16130707 - 16130670
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16130707 tactccctccggtcctttttattagaaacaaaagtgaa 16130670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 35121236 - 35121293
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattat 294  Q
    ||||||||||||| ||||| | ||||||| |||||||||||||||  |||||||||||    
T  35121236 attgaccaagtttcaagtatgtttgaagcaaaatttcatttgtgcccttatttattat 35121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 27654606 - 27654642
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27654606 tactccctccggtcctttttattagaaacaaaagtga 27654642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 41957323 - 41957257
Alignment:
Q  289 tattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtatt 355  Q
    |||||||||| ||||||||||||||||||   |||||| ||| || |||||||||| ||||| ||||    
T  41957323 tattatgagaaagaatattaaaagtaagtcttttggtgtaatcaagagtaattaatatagggatatt 41957257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 13879235 - 13879198
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  13879235 tactccctccgatcctttttattagaaacaaaagtgaa 13879198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 23933512 - 23933475
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  23933512 tactccctctgatccattttattagaaacaaaagtgaa 23933475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 1553717 - 1553749
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaa 203  Q
    ||||||||| |||||||||||||||||||||||    
T  1553717 tactccctccggtcctttttattagaaacaaaa 1553749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 27333131 - 27333095
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  27333131 tacttcctccggtcctttttattagaaacaaaagtga 27333095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 38859015 - 38859074
Alignment:
Q  298 agagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||||||||||||||||||| ||| || ||| |||| |||||||| |||||| ||||||    
T  38859015 agagaatattaaaagtaagtaaattgttgtaatcaaaa-taattaatataggggcattcat 38859074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 45192765 - 45192729
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  45192765 tactacctccggtcctttttattagaaacaaaagtga 45192729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 23320112 - 23319928
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  23320112 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 23320013  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||||||||||||||  |         |||||||||||||||||||| |||||||| |||||||||||||    
T  23320012 aataaagagtaattaatttaggggtattcatggaaatttttt-aaatgtagaggtgtattaaacgaagataactattttcaatgta 23319928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 171 - 413
Target Start/End: Complemental strand, 48394354 - 48394114
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaattcnnnnnnnnnnnnnnnnataagaaatattgaccaagttttaagtaagcttgaagctaaat 270  Q
    ||||||||| ||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||| | ||||| ||||||    
T  48394354 tactccctccggtcctttttattagaaacaaaagtgaattttttttttgtcctttttataagaaatattgaccaagttttaagtatgtttgaaactaaat 48394255  T
Q  271 ttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcattaannnnnnnna 370  Q
    |||||||||||  ||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||        |    
T  48394254 ttcatttgtgcccttatttattatgaaaga--atattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcttgaagaagaagaa 48394157  T
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||| ||||||||||||||||||||||||| |||||||||||||    
T  48394156 aaaagtagaggtgtattaaatgaagataaatattttcaatgta 48394114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 236 - 413
Target Start/End: Complemental strand, 41851143 - 41850966
Alignment:
Q  236 tattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaa 335  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  41851143 tattgaccaagtttcaagtatgtttgaaactaaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtgagttggtggaataaaga 41851044  T
Q  336 gtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||  ||||||||||||    
T  41851043 gtaattaatttaggggtattcataaaaaaaaatttaaatgtagaggtgtattaaatgaagataacaattttcaatgta 41850966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 48390456 - 48390272
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||| ||     
T  48390456 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgtccttatttattatgagtgagaatattaaaagtaagtaagttgatga 48390357  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||| ||||||||||||||||||||||  |         |||||||||| |||||||||| ||||||| |||||||||||||    
T  48390356 aataaaaaataattaatttaggggtattcatggaatattttttaaatgtagagatgtattaaat-aagataactattttcaatgta 48390272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 7568306 - 7568131
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  7568306 attgatcaagtttcaagtatgtttgaaggtaaatttcatttgtgcccttatttattatgaaagagaatattaaaagtaagtaagttggtggaataaagag 7568207  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| ||         |||||||||  |||||||||||||||| | |||||||||||||    
T  7568206 taattaatttaggggtattcatgaaattttttt-aaatgtagaaatgtattaaatgaagatgactattttcaatgta 7568131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 18674561 - 18674690
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||| ||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||| |||||||||||| ||| |||||||||||||||    
T  18674561 ataagaaa-attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattataagagagaatattgaaaataagtaagttggtgg 18674659  T
Q  328 aataaaaagtaattaatttaggggtattcat 358  Q
    |||||| ||||||||||||||||||||||||    
T  18674660 aataaagagtaattaatttaggggtattcat 18674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 24989779 - 24989900
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  24989779 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 24989878  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| ||||||||||    
T  24989879 taattaatttaagggtattcat 24989900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 8417724 - 8417834
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||    
T  8417724 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattaattatgagagataatattaaaagtaagtaagttgatggaataaagag 8417823  T
Q  337 taattaattta 347  Q
    |||||||||||    
T  8417824 taattaattta 8417834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 45062521 - 45062642
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | || |||||||||||||| |||||  || || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  45062521 attgatcaagtttcaaatatgtttaaagctaaatttcatctgtgcccttgttgattatgagagagaatattaaaagtaagtaagttgatggaataaaaag 45062620  T
Q  337 taattaatttaggggtattcat 358  Q
    ||||||||||| ||||||||||    
T  45062621 taattaatttaagggtattcat 45062642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 965222 - 965166
Alignment:
Q  266 taaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagtt 322  Q
    |||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||    
T  965222 taaatttcgtttgtgttcttatttattatgagaaagaatattaaaagtaagtaagtt 965166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 24989714 - 24989750
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24989714 tactccctccggtcctttttattagaaacaaaagtga 24989750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 48390513 - 48390474
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaatt 210  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  48390513 tactacctccggtcctttttattagaaacaaaagtgaatt 48390474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 8417659 - 8417695
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  8417659 tacttcctccggtcctttttattagaaacaaaagtga 8417695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 18674503 - 18674539
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  18674503 tactctctctgatcctttttattagaaacaaaagtga 18674539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 32305765 - 32305955
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32305765 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 32305864  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||||| | ||||||||||||||||||||||  |         |||||||||| |||||||||| ||||||| ||||||||||||| |||||    
T  32305865 aataaagaataattaatttaggggtattcatggaatattttttaaatgtagagatgtattaaat-aagataactattttcaatgtatttctt 32305955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 228 - 419
Target Start/End: Complemental strand, 35634927 - 35634737
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||     
T  35634927 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgc 35634828  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
     ||||| |||||||||||||||| |||||||  |         ||||||| | ||||||||||||||||||| ||||||||||||| |||||    
T  35634827 gataaagagtaattaatttagggttattcatggatttttttt-aaatgtaaaagtgtattaaatgaagataactattttcaatgtatttctt 35634737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 42569959 - 42570151
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||||||||||||||||||||||||   |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||     
T  42569959 ataagaaatattgaccaagttttaagtatcattgaagctaaattttatttgtgcatttatttattatgagagagaatattaaaaataagtaagttgatga 42570058  T
Q  328 aataaaaagtaattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||||| |||||||||||||||| |||||||  |          || |||| ||||||||||||||||||||| ||||||||||||| |||||    
T  42570059 aataaatagtaattaatttagggatattcatagattttttttttaattgtaaaggtgtattaaatgaagataactattttcaatgtatttctt 42570151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 8669799 - 8669974
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  8669799 attgatcaagtttcaagtatgtttgaagttaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 8669898  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||| ||||||||| |||         ||||||||| ||||||||||||||||| | |||||||||||||    
T  8669899 taattaatttaagggtattca-taaattttttttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 8669974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 8106959 - 8107134
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | ||||| ||||||||||||||||   ||||||||||||||| |||| ||||||||||| |||||| |||||||||| ||    
T  8106959 attgaccaagtttcaagtatgtttgaaactaaatttcatttgtgtccttatttattatgagatagaaaattaaaagtaaataagttagtggaataaagag 8107058  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
     ||||||||||||||||||||| ||         ||||||||| ||||||||||||||||  | |||||||||||||    
T  8107059 gaattaatttaggggtattcatgaatttttttt-aaatgtagaagtgtattaaatgaagaggactattttcaatgta 8107134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 13882151 - 13882325
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | |||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||    
T  13882151 attgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatatt-aaagtaagtaagttgatggaataaagag 13882249  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||| ||||||||| ||          ||||||||| ||||||||||||||||| | |||||||||||||    
T  13882250 taattaatttaagggtattca-tagaattattttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 13882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 29226342 - 29226516
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||| || ||| |||||||  || |||||||||||||||||||||| ||||||||| ||    
T  29226342 attgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcctt-attgattatgaatgaaaatattaaaagtaagtaagttgatggaataaagag 29226440  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||| ||||||| | ||          ||||||||| ||||||||||||||||| | |||||||||||||    
T  29226441 taattaatttaagggtattga-tagaatttttttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 29226516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 37533854 - 37533942
Alignment:
Q  259 ttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaattta 347  Q
    |||||| |||||||| |||||||  ||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  37533854 ttgaagttaaatttcgtttgtgcccttattgattatgagagagaatattaaaaataagtaagttgatggaataaagagtaattaattta 37533942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 36741801 - 36741715
Alignment:
Q  261 gaagctaaatttcatttgtgcttttattta---ttatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaat 344  Q
    ||||||||||||||||||||   |||||||   |||| ||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  36741801 gaagctaaatttcatttgtgtccttatttattattattagagagaatattaaaagtaagtaagttagtggaattaagagtaattaat 36741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 17855405 - 17855533
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||| ||| ||||||||  | | ||| |||||||||||||||    |||||||| |||||| | | |||||||||||| ||||||  |||    
T  17855405 ataagaaatattgaacaatttttaagtgtgttggaaactaaatttcatttgtatccttatttatgatgagaaatagtattaaaagtaattaagttaatgg 17855504  T
Q  328 aataaaaagtaattaatttaggggtattc 356  Q
    |   || ||||||||||||||||||||||    
T  17855505 aggcaatagtaattaatttaggggtattc 17855533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 31598688 - 31598740
Alignment:
Q  288 ttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaat 340  Q
    |||||||||||||||||||||||||||| |||||| || |||| || ||||||    
T  31598688 ttattatgagagagaatattaaaagtaattaagttagtagaattaatagtaat 31598740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 32305708 - 32305745
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaa 208  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  32305708 tactacctccggtcctttttattagaaacaaaagtgaa 32305745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 45177598 - 45177557
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgt 412  Q
    ||||||||| ||||||||||||||||| | ||||||||||||    
T  45177598 aaatgtagaagtgtattaaatgaagatgactattttcaatgt 45177557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 32026755 - 32026795
Alignment:
Q  286 atttattatgagagagaatattaaaagtaagtaagttggtg 326  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  32026755 atttattgtgagagagaatattaaaagtatgtaaattggtg 32026795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 26877220 - 26877406
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||    
T  26877220 ataagaaatattgaccaaattttaagtatgtttgaagctaaatttcatttgtgtccttatttattatgagatagaatattaaaagtaagtaagttggtgg 26877319  T
Q  328 aataaaaagtaattaatttaggggtattcatta-annnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| |||||||||||||||||||||||| |           ||||||||||||||||||| ||||||||| |||||||||||||    
T  26877320 aataaagagtaattaatttaggggtattcatgatttttttttttaaatgtagaggtgtattaactgaagataactattttcaatgta 26877406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 782850 - 783034
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  782850 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcttttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 782949  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| | ||||||||||||||||||||||  |         |||||||||| |||||||||| ||||||| |||||||||||||    
T  782950 aataaagaataattaatttaggggtattcatggaatattttttaaatgtagagatgtattaaat-aagataactattttcaatgta 783034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 30537758 - 30537583
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30537758 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagag 30537659  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| ||         |||||||||  |||||||||||||||| | |||||||||||||    
T  30537658 taattaatttaggggtattcatgaaaaattttt-aaatgtagaaatgtattaaatgaagatgactattttcaatgta 30537583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 27627810 - 27627993
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||    
T  27627810 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgaga--gaatattaaaagtaagtaagttggtgg 27627907  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||||||||||||||  |         |||||||||  | |||||||||||||||| |||||||||||||    
T  27627908 aataaagagtaattaatttaggggtattcatgtaattttttttaaatgtagaaatatattaaatgaagataactattttcaatgta 27627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 36187376 - 36187560
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||| ||||||||| |||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  36187376 ataagaaatattaaccaagtttcaagtatatttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgg 36187475  T
Q  328 aataaaaagtaattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| | ||||||||||||||||||||||  |         |||||||||| |||||||||| ||||||| |||||||||||||    
T  36187476 aataaagaataattaatttaggggtattcatggaatattttttaaatgtagagatgtattaaat-aagataactattttcaatgta 36187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 50150444 - 50150325
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  50150444 attgatcaagttttaagtatgtttgaagctaaatttcatttgtgtccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaaaag 50150345  T
Q  337 taattaatttaggggtattc 356  Q
    ||||||||||| ||||||||    
T  50150344 taattaatttaagggtattc 50150325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 43034257 - 43034082
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  43034257 attgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 43034158  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||||| ||||||||| ||          ||||||||| ||||||||||||||||| | |||||||||||||    
T  43034157 taattaatttaagggtattca-tagaattattttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 43034082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 3067793 - 3067967
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||| || ||||||| |     
T  3067793 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaaaattaaaagtaaataagttagtagaataaagaa 3067892  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
     ||||||||||| ||||||||| ||         ||||||||| ||||||||||||||||| | |||||||||||||    
T  3067893 gaattaatttagaggtattcatgaatttttct--aaatgtagaagtgtattaaatgaagatgactattttcaatgta 3067967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 25934406 - 25934519
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||| ||||||||||||||||  |||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||    
T  25934406 attgaccaagtttcaagtatgtttgaagataaatttcatttgtgcccttatttattatgagagagaaaattaaaaataaataagttagtggaataaagag 25934505  T
Q  337 taattaatttaggg 350  Q
     |||||||||||||    
T  25934506 gaattaatttaggg 25934519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 419
Target Start/End: Original strand, 33313300 - 33313478
Alignment:
Q  241 accaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaat 340  Q
    |||||||||||| || | || ||  ||||||| ||||||||  |||||||||||||||||||| ||||||||||| |||||| |||||||||| |  |||    
T  33313300 accaagttttaaatatgtttaaatataaattttatttgtgcccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagatgaat 33313399  T
Q  341 taatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    ||||||| || ||||||| ||         |||| || | ||||||||||||||||| | |||||| |||||| |||||    
T  33313400 taatttatggatattcatgaatttttttttaaatataaaagtgtattaaatgaagatgactatttttaatgtatttctt 33313478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 354
Target Start/End: Complemental strand, 56551573 - 56551485
Alignment:
Q  262 aagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtat 354  Q
    ||||||||||||||||||||  ||| ||||||| |||||||||| |||    ||| ||||| ||||||| || |||||||||| |||||||||    
T  56551573 aagctaaatttcatttgtgcccttaattattattagagagaatactaa----aagcaagtttgtggaattaagagtaattaatataggggtat 56551485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 26877163 - 26877199
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26877163 tactccctccggtcctttttattagaaacaaaagtga 26877199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 27627753 - 27627788
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtg 206  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27627753 tactccctccggtcctttttattagaaacaaaagtg 27627788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 36187319 - 36187358
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtgaatt 210  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  36187319 tactacctccggtcctttttattagaaacaaaagtgaatt 36187358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 44538509 - 44538447
Alignment:
Q  268 aatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaat 330  Q
    |||||||||| | | ||||||||| |||| | |||||||||||||||| ||| ||||||||||    
T  44538509 aatttcatttatacctttatttatcatgaaatagaatattaaaagtaaataaattggtggaat 44538447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 25934544 - 25934593
Alignment:
Q  370 aaaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    ||||| |||| ||||||||||||||||| | ||||||||||||| |||||    
T  25934544 aaaatatagaagtgtattaaatgaagatgactattttcaatgtatttctt 25934593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 50150509 - 50150476
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaag 204  Q
    ||||||||| ||||||||||||||||||||||||    
T  50150509 tactccctccggtcctttttattagaaacaaaag 50150476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 782793 - 782829
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  782793 tactacctccggtcctttttattagaaacaaaagtga 782829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 22651847 - 22651799
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgtacttctt 419  Q
    |||| |||| |||||||||| |||||| ||||||||||||||| |||||    
T  22651847 aaatatagaagtgtattaaaagaagatgattattttcaatgtatttctt 22651799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 25934341 - 25934377
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  25934341 tactctctccggtcctttttattagaaacaaaagtga 25934377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 29989703 - 29989779
Alignment:
Q  268 aatttcatttgtgcttttatttatta-tgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaa 343  Q
    ||||||| ||||| | |||||||||| || ||||||||||||||||||||| ||||  | |||| || |||||||||    
T  29989703 aatttcacttgtgttcttatttattactgggagagaatattaaaagtaagttagttattagaattaagagtaattaa 29989779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 43034322 - 43034286
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  43034322 tactacctccggtcctttttattagaaacaaaagtga 43034286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 228 - 413
Target Start/End: Original strand, 6760 - 6946
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |    
T  6760 ataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcgcttatttattatgagaaagaatattaaaagtaagtaagttggtag 6859  T
Q  328 aataaaaagtaattaatttaggggtattcat-taannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||| ||||||||||||| || |||||||  ||         |||||||||| |||||||||||||||||| |||||||||||||    
T  6860 aataaagagtaattaatttaaggatattcatagaaaaaaaaattaaatgtagagatgtattaaatgaagataactattttcaatgta 6946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 24868524 - 24868648
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    |||||||||||||||||||||| ||||| | |||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  24868524 ataagaaatattgaccaagtttcaagtatgtttgaagttaaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtaagttggtgg 24868623  T
Q  328 aataaaaagtaattaatttaggggt 352  Q
    |||||| ||||||||||||||||||    
T  24868624 aataaagagtaattaatttaggggt 24868648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 40385362 - 40385186
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||| |||||||||| ||    
T  40385362 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagag 40385263  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
     |||||||||||||||||||||  |         ||||||||| ||||||||||||||||| | |||||||||||||    
T  40385262 gaattaatttaggggtattcatggattattttttaaatgtagaagtgtattaaatgaagatgactattttcaatgta 40385186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 33314394 - 33314515
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| || || | |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  33314394 attgatcaagtttcaaatatgtttgaagctaaatttcatttgtgccctcatttattatgagagagaatattaaaagtaagcaagttggtggaataaagag 33314493  T
Q  337 taattaatttaggggtattcat 358  Q
    |||||||||||||  |||||||    
T  33314494 taattaatttaggaatattcat 33314515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 21263025 - 21262907
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||| ||||||| ||||| | |||||||||||||||||||| ||   |||| |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  21263025 attgatcaagtttcaagtatgtttgaagctaaatttcatttgcgcccatattgattatgagagagaatattaaaagtaagtaagttgatggaataaagag 21262926  T
Q  337 taattaatttaggggtatt 355  Q
    ||||||||||| |||||||    
T  21262925 taattaatttaagggtatt 21262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 3097678 - 3097561
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| |||||| |||||||||| ||    
T  3097678 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagtgaaaattaaaagtaaataagttagtggaataaagag 3097579  T
Q  337 taattaatttaggggtat 354  Q
     | |||||||||||||||    
T  3097578 gatttaatttaggggtat 3097561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 41174788 - 41174612
Alignment:
Q  237 attgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaag 336  Q
    ||||||||||||| |||||   || ||||||||||||||||||||  ||||||||||||||||||||  |||||||||| |||||| ||| |||||| ||    
T  41174788 attgaccaagtttcaagtatattttaagctaaatttcatttgtgcccttatttattatgagagagaaagttaaaagtaaataagttagtgaaataaagag 41174689  T
Q  337 taattaatttaggggtattcattaannnnnnnnaaaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
     |||||||| |||||||||||| ||        ||||| |||| || |||||||||||||| | |||||||||||||    
T  41174688 gaattaattgaggggtattcatgaattttttttaaaatatagaagtatattaaatgaagatgactattttcaatgta 41174612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 4237940 - 4238039
Alignment:
Q  259 ttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 358  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||| |||||  |||||| |||||||||| || ||||||||||||||||||||||||    
T  4237940 ttgaagttaaatttcatttgtgccgttatttattatgagatagaataataaaatgaagtaaattggtggaatcaagagtaattaatttaggggtattcat 4238039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 2935025 - 2934897
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatatt-aaaagtaagtaagttggtg 326  Q
    |||||||| ||| ||||| ||||||||    |||||| |||||||||||| | |  ||||||||||||||||||  |||| |||||||| ||| |||  |    
T  2935025 ataagaaagatttaccaatttttaagtgtatttgaagttaaatttcatttatacccttatttattatgagagaggttattaaaaagtaaataaattgccg 2934926  T
Q  327 gaataaaaagtaattaatttaggggtatt 355  Q
    |||| |||||||||||||||||| |||||    
T  2934925 gaatcaaaagtaattaatttaggagtatt 2934897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 4238195 - 4238238
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgtac 414  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  4238195 aaatgtagagatgtattaaatgaagataactattttcaatgtac 4238238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 21263090 - 21263054
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21263090 tactccctccggtcctttttattagaaacaaaagtga 21263054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 3097541 - 3097499
Alignment:
Q  371 aaatgtagaggtgtattaaatgaagataattattttcaatgta 413  Q
    ||||||||| ||||||||||||||||| | |||||||||||||    
T  3097541 aaatgtagaagtgtattaaatgaagattactattttcaatgta 3097499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 3097741 - 3097708
Alignment:
Q  174 tccctctggtcctttttattagaaacaaaagtga 207  Q
    |||||| |||||||||||||||||||||||||||    
T  3097741 tccctccggtcctttttattagaaacaaaagtga 3097708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 24868671 - 24868708
Alignment:
Q  376 tagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| | |||||||||||||    
T  24868671 tagaggtgtattaaatgaagattactattttcaatgta 24868708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 4238147 - 4238183
Alignment:
Q  321 ttggtggaataaaaagtaattaatttaggggtattca 357  Q
    |||||||||| || |||||||||||||||||||||||    
T  4238147 ttggtggaatcaagagtaattaatttaggggtattca 4238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 40385430 - 40385394
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||| |||| |||||||||||||||||||||||||||    
T  40385430 tacttcctccggtcctttttattagaaacaaaagtga 40385394  T

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Target: scaffold0008 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 258452 - 258358
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagtt 322  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  258452 ataagaaatattgaccaagttttaagtatgtttgaagttaaatttcatttgtgcctttatttattatgagagagaatattaaaattaagtaagtt 258358  T

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Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 258314 - 258277
Alignment:
Q  376 tagaggtgtattaaatgaagataattattttcaatgta 413  Q
    |||||||||||||||||||||| | |||||||||||||    
T  258314 tagaggtgtattaaatgaagattactattttcaatgta 258277  T

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Target: scaffold0008; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 258509 - 258473
Alignment:
Q  171 tactccctctggtcctttttattagaaacaaaagtga 207  Q
    |||||| || |||||||||||||||||||||||||||    
T  258509 tactccatccggtcctttttattagaaacaaaagtga 258473  T

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Target: scaffold0057 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 30467 - 30594
Alignment:
Q  228 ataagaaatattgaccaagttttaagtaagcttgaagctaaatttcatttgtgcttttatttattatgagagagaatattaaaagtaagtaagttggtgg 327  Q
    ||||||||| |||||||| ||| ||||  | |||||  ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||    
T  30467 ataagaaatgttgaccaattttcaagtttgtttgaaattaaatttcatttgtgcccttatttattatgagagacaatattaaaagtaagtaagttggcgg 30566  T
Q  328 aataaaaagtaattaatttaggggtatt 355  Q
    ||| || |||||||||||||||||||||    
T  30567 aatcaagagtaattaatttaggggtatt 30594  T

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Target: scaffold0057; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 30906 - 30839
Alignment:
Q  284 ttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtatt 355  Q
    |||||||||||||||||||||||||||    |||| ||||||||||| || |||||||||||||||||||||    
T  30906 ttatttattatgagagagaatattaaa----agtatgttggtggaatcaagagtaattaatttaggggtatt 30839  T

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