View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_15 (Length: 406)
Name: NF13995_low_15
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 388
Target Start/End: Original strand, 5384991 - 5385357
Alignment:
| Q |
23 |
gactataattcctccggaattgtttgggaatcatggaaaataacgttttattcaatttgtgttaaggaacagtgctattttgcttatgtaactgttattt |
122 |
Q |
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| T |
5384991 |
gactataattcctccagtattgttcgggaatcatggaaaataacgttttattcaatttgtgttaagcaacagtgctattttgcttatgtaactgttattt |
5385090 |
T |
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| Q |
123 |
gacaacattttgttatacagctatgagtgagactgagcacccctaattaacaaaactgatttataacaatttttaaattaatttcaataagcatgccttc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5385091 |
gacaacattttgttatacagctatgagtgagactgagcaccactaattaacaaaactgatttatagcaatttttaaattaatttcaataagcatgccttc |
5385190 |
T |
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| Q |
223 |
actcctcatgggattataaatctctttcgaccttttttcattacccagccatgaaccaaagacctcaaggttgaggcatatacctcctcatgggattata |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5385191 |
actcctcatgggattataaatctctttcgaccttttttcattacccagccatgaaccaaagacctcaaggttgaggcatatacctcctcatgggattata |
5385290 |
T |
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| Q |
323 |
aatgtatatgggt-nnnnnnnnncagattttaacatatataagaaatctaaaaagtctagaagtcct |
388 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5385291 |
aatgtatatgggtaaaaaaaaaacagattttaacatatataagaaatctaaaaagtctagaagtcct |
5385357 |
T |
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