View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_16 (Length: 401)
Name: NF13995_low_16
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 665229 - 664853
Alignment:
| Q |
13 |
atgcagaactatcataaaatgtaaaaagtcagacatttaaaggcccatttcttaatagatctaaataaaaatttaaatatctttacaaaattaaattatt |
112 |
Q |
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| T |
665229 |
atgcagaactatcataaaatgtaaaaagtcagacatttaaaggcccatttcttaatagatctaaataaaaatttaaatatctttacaaaattaaattatt |
665130 |
T |
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| Q |
113 |
ccnnnnnnnnncttcttcacttcccttctatacccgaaaataaccataaaaaattattgtattagtatttagagcctaaaatacaactggttatctgttc |
212 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
665129 |
ccttttttt---ttcttcacttcccttctatacccgaaaataaccataaaaacctattgtattagtatttagagcctaaaatacaactggttatctgttc |
665033 |
T |
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| Q |
213 |
agttggaacacagaagacaaaatagcttaaaatttaccccttcaaaattgtacattctaatatacgtctttgattctgtcatttttcattcactgtgtgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
665032 |
agttggaacacagaagacaaaatagcttaaaatttaccccttcaaaattgtacattctaatatacgtctttgattctgtcatttttcattcactgtgtgt |
664933 |
T |
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| Q |
313 |
gcattaattcttgtgcagtggtaacacatcataaactannnnnnnatactctttcaaatacatacatcctgtaatctgtt |
392 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
664932 |
gtattaattcttgtgcagtggtaacacatcataaactatttttttatactctttcaaatacatacatcctgtaatctgtt |
664853 |
T |
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