View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_17 (Length: 401)
Name: NF13995_low_17
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 128 - 383
Target Start/End: Complemental strand, 17328278 - 17328023
Alignment:
| Q |
128 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctatt |
227 |
Q |
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| T |
17328278 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctttt |
17328179 |
T |
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| Q |
228 |
tctcaaccttcaaccactttcactaccaggcctattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggt |
327 |
Q |
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| T |
17328178 |
tctcaaccttcaaccactttcactaccaggcttattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggt |
17328079 |
T |
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| Q |
328 |
ggtgctagtttcaacccttcatccacaatttccttctatacattaggactaagacc |
383 |
Q |
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| T |
17328078 |
ggtgctagttttaacccttcatccacaatttccttctacacattaggactaagacc |
17328023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17328391 - 17328339
Alignment:
| Q |
17 |
acatccaaaataagtgagtgagagtgtttcatcttccaagttccaataccaat |
69 |
Q |
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| T |
17328391 |
acatccaaaatatgtgagtgagagtgtttcatcttccaagttccaataccaat |
17328339 |
T |
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