View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_low_19 (Length: 396)

Name: NF13995_low_19
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_low_19
NF13995_low_19
[»] chr3 (22 HSPs)
chr3 (1-371)||(6527245-6527615)
chr3 (1-376)||(6848826-6849201)
chr3 (71-181)||(6558582-6558691)
chr3 (260-380)||(6550308-6550428)
chr3 (6-118)||(6938784-6938892)
chr3 (254-367)||(6558829-6558940)
chr3 (45-117)||(6796826-6796898)
chr3 (312-380)||(6789464-6789532)
chr3 (133-234)||(6796932-6797033)
chr3 (282-380)||(6938462-6938558)
chr3 (285-375)||(6797236-6797326)
chr3 (152-211)||(6938683-6938742)
chr3 (55-141)||(6800093-6800178)
chr3 (125-211)||(6789191-6789277)
chr3 (254-338)||(6802863-6802949)
chr3 (309-375)||(6411171-6411237)
chr3 (63-97)||(8593966-8594000)
chr3 (6-55)||(6550000-6550049)
chr3 (137-178)||(7745471-7745512)
chr3 (315-355)||(6466146-6466186)
chr3 (143-191)||(8451720-8451767)
chr3 (136-172)||(8594045-8594081)
[»] scaffold0425 (1 HSPs)
scaffold0425 (45-375)||(11975-12305)
[»] chr1 (1 HSPs)
chr1 (143-181)||(7982062-7982100)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 6527245 - 6527615
Alignment:
Q  1 tgagatgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527245 tgagatgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaa 6527344  T
Q  101 attcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527345 attcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggt 6527444  T
Q  201 tcttctgtgctcaaaaagacacaaaagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacacgctcttttggtaatataaat 300  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6527445 tcttctgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacacgctcttttagtaatataaat 6527544  T
Q  301 tgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527545 tgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggc 6527615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 6848826 - 6849201
Alignment:
Q  1 tgagatgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848826 tgagatgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaa 6848925  T
Q  101 attcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848926 attcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggt 6849025  T
Q  201 tcttctgtgctcaaaaagacacaaaagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacacgctcttttggtaatataaat 300  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6849026 tcttctgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacaccctcttttggtaatataaat 6849125  T
Q  301 tgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcacaaa 376  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6849126 tgcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggcacaaa 6849201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 6558582 - 6558691
Alignment:
Q  71 caccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaa 170  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6558582 caccagaagttgacttgtcaatttagtgaaattcaataaaactctacttt-cattgctgtacttctgattgtaattcaatactttttctcagtttgtgaa 6558680  T
Q  171 taagtttatct 181  Q
    || ||||||||    
T  6558681 taggtttatct 6558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 6550308 - 6550428
Alignment:
Q  260 aatttctgcataccgtgacacgctcttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataat 359  Q
    ||||| |||||| | |||||| |  ||||||||||| |||||||||||  | ||  |||||||||||||||||||||||||||||||||| |||||||||    
T  6550308 aatttttgcatatcatgacactcatttttggtaatacaaattgcatcacattattctttccctagttttacattcaaacatagttaagataacatataat 6550407  T
Q  360 tatctcactggcacaaaatct 380  Q
    |||||||||||||||||||||    
T  6550408 tatctcactggcacaaaatct 6550428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 6938892 - 6938784
Alignment:
Q  6 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 105  Q
    |||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    |||||||    
T  6938892 tgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgacttgtcaattt----aaattca 6938797  T
Q  106 ataaaacactact 118  Q
    |||||||||||||    
T  6938796 ataaaacactact 6938784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 367
Target Start/End: Original strand, 6558829 - 6558940
Alignment:
Q  254 gtctttaatttctgcataccgtgacacgctcttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcaca 353  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||||||||| ||  |||||| ||||||||||||| ||||||||||| ||||||| |||    
T  6558829 gtctttaatttctgcatactgt--cactctcttttggtaatataaattgcaacacatcatctcttccctagttttaaattcaaacataattaagataaca 6558926  T
Q  354 tataattatctcac 367  Q
    ||||||||||||||    
T  6558927 tataattatctcac 6558940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 6796826 - 6796898
Alignment:
Q  45 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactac 117  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6796826 tctttgtatgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactac 6796898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 6789464 - 6789532
Alignment:
Q  312 atcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcacaaaatct 380  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||    
T  6789464 atcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatct 6789532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 6796932 - 6797033
Alignment:
Q  133 ttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgctcaaaaagacacaaaagttcgt 232  Q
    ||||| ||| || ||||| ||||||||||||||||||||||| |||||| ||||||| ||| ||||||||| ||||||||||||||| | || |||||||    
T  6796932 ttctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtgctcaaaaagaaataacagttcgt 6797031  T
Q  233 ta 234  Q
    ||    
T  6797032 ta 6797033  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 6938558 - 6938462
Alignment:
Q  282 ctcttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcacaaaatct 380  Q
    ||||||||||||||||||||||||||  |||||||  ||||| ||||| ||||||||||  |||| || ||||||||| ||||||||||||||||||||    
T  6938558 ctcttttggtaatataaattgcatcacatcatctt--ccctatttttagattcaaacattattaaaataacatataatcatctcactggcacaaaatct 6938462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 6797236 - 6797326
Alignment:
Q  285 ttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcacaa 375  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||| |||||| |||| ||||||| ||| ||||||||||||||| |||||    
T  6797236 ttttggtaatataaattgcatcacatcaacttttccctatttttaaattcaatcataattaagataacacataattatctcactgacacaa 6797326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 6938742 - 6938683
Alignment:
Q  152 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgct 211  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  6938742 ctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctgctgtgct 6938683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 6800093 - 6800178
Alignment:
Q  55 tccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattg 141  Q
    |||||||||||||||| || |||| |||||||| |||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  6800093 tccttcctagttcatagactggaaattgacttgccaatttagggaaattcaataaaacacta-atttcattgcaatactactgattg 6800178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 6789191 - 6789277
Alignment:
Q  125 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgct 211  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||  ||||||| | |  |||| |||| |||||| |||||||    
T  6789191 tgcagtacttctgattttaattcattaatttctctcagtttgtgaatatttttatctatttatatcactagagggttctgctgtgct 6789277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 6802863 - 6802949
Alignment:
Q  254 gtctttaatttctgcataccgtgacacgc--tcttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaac 338  Q
    ||||||||||||||||||| ||||||| |  | |||||||||||||| ||| |||   |||| ||||||||| |||||||| |||||    
T  6802863 gtctttaatttctgcatactgtgacacccttttttttggtaatataatttgaatcgcatcatattttccctaattttacatccaaac 6802949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 6411171 - 6411237
Alignment:
Q  309 gtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcacaa 375  Q
    ||||||||||||||||||||| | ||||||||| |||| || ||||||| || ||||| || |||||    
T  6411171 gtcatcttttccctagttttaaagtcaaacataattaaaataacatatagttttctcattgacacaa 6411237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 8593966 - 8594000
Alignment:
Q  63 agttcatacaccggaagttgacttgtcaatttagt 97  Q
    ||||||||||| |||||||||||||||||||||||    
T  8593966 agttcatacactggaagttgacttgtcaatttagt 8594000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 6550000 - 6550049
Alignment:
Q  6 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgt 55  Q
    |||||||||| |||||||||||| |||||||  ||| |||||||||||||    
T  6550000 tgtgatgtcaggactcaggcatccacttcaaagtctgactctttgtatgt 6550049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 7745512 - 7745471
Alignment:
Q  137 gattgtaattcattactttttctcagtttgtgaataagttta 178  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  7745512 gattgaaattcattactttttcacagtttgtgaataggttta 7745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 6466186 - 6466146
Alignment:
Q  315 ttttccctagttttacattcaaacatagttaagatcacata 355  Q
    |||| ||||||||||||||||||||||||||| || |||||    
T  6466186 ttttgcctagttttacattcaaacatagttaatataacata 6466146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 8451767 - 8451720
Alignment:
Q  143 aattcattactttttctcagtttgtgaataagtttatctttctgcatca 191  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  8451767 aattcattactttt-ctcagtttgtgaataggtctatctatctgcatca 8451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 8594045 - 8594081
Alignment:
Q  136 tgattgtaattcattactttttctcagtttgtgaata 172  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8594045 tgattgaaattcattattttttctcagtttgtgaata 8594081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 45 - 375
Target Start/End: Original strand, 11975 - 12305
Alignment:
Q  45 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11975 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactactattcattgcagtacttctgattgtaa 12074  T
Q  145 ttcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgctcaaaaagacacaaaagttcgttaagcatatgtt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  12075 ttcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgctcaaaaagccacaacagttcgttaagcatatgtt 12174  T
Q  245 aactccattgtctttaatttctgcataccgtgacacgctcttttggtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagtt 344  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12175 aactccattgtcttaaatttctgcataccgtgacaccctcttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacatagtt 12274  T
Q  345 aagatcacatataattatctcactggcacaa 375  Q
    |||||||||||||||||||||||||||||||    
T  12275 aagatcacatataattatctcactggcacaa 12305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 7982062 - 7982100
Alignment:
Q  143 aattcattactttttctcagtttgtgaataagtttatct 181  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatct 7982100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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