View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_20 (Length: 388)
Name: NF13995_low_20
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 52 - 372
Target Start/End: Original strand, 43588540 - 43588871
Alignment:
| Q |
52 |
tactatagtattactagtagaaacgttccaaagtctgaagaaactactctgg-----------tagaaacgttcctcgtcctcaatttcactactacaaa |
140 |
Q |
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| T |
43588540 |
tactatggtattactagtagaaacgttccaaagtctgaaggaactactctggtattatgctggtagaaacgttcctcgtcctcaatttcactactataaa |
43588639 |
T |
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| Q |
141 |
attcaagttctgatgggtgttgatgggtcactttacagtgattcctcgtgttcaaaatttgtgctcaatttcacagtgattcttcgtacggccacctcca |
240 |
Q |
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| T |
43588640 |
attcaagttctgatgggtgttgatgggtcactttacagtgattcctcgtgttcaaaatttgtgctcaatttcacagtgattcttcgtacgaccatctcca |
43588739 |
T |
|
| Q |
241 |
cggtttaatatgtcatagcttgaagaccatatgcaataataccaaattgatctccagttgaaagggacagaacgatgtcatcggataaaggtcgtcggaa |
340 |
Q |
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||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43588740 |
cggttaaatctgtcatagcttgaagaccatatgcaagaataccaaattgatctccagttgaaagggacagaacgatgtcatcggataaaggtcgtcggga |
43588839 |
T |
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| Q |
341 |
aattgagatactagccatggtgggtagtggtg |
372 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
43588840 |
aattgagatactggccatggtgggtagtggtg |
43588871 |
T |
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