View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_22 (Length: 381)
Name: NF13995_low_22
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 350
Target Start/End: Complemental strand, 39916223 - 39915870
Alignment:
| Q |
2 |
ggtgggtgtgaatgatattttttgatgcaaatgagttgtgaatgatgatgatgaatcaaagttagtaaattatatttgtcggtagagtgaagttaacaag |
101 |
Q |
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| T |
39916223 |
ggtgggtgtgaatgatattttttgatgcaaatgagttgtgaatgatgatgatgaatcaaagttagtaaattatatttgtcggtagagtgaagttaacaag |
39916124 |
T |
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| Q |
102 |
gattgagctggttacagcagcaaggcaagtcctattcaatatatgtctattccatatagtaagaattaatacttattgaagcaaagctgtgtctttgtca |
201 |
Q |
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| T |
39916123 |
gattgagctggttacagcagcaaggcaagtcctattcaatatatgtctattccatatagtaagaattaatacttattgaagcaaagctgtgtctttgtca |
39916024 |
T |
|
| Q |
202 |
ttccatttatgatatta-tcagcatgtgtgccgccatgcattccgatctatcacacaccttagcttctttagttgcttctaaacttcccctacatttatt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39916023 |
ttccatttatgatattattcagcatgtgtgccgccatgcattccgatctatcacacaccttagcttctttagttgcttctaaacttcccctacatttatt |
39915924 |
T |
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| Q |
301 |
tcatttaattaatttaattaagtacta----ctatagtatttgtcttccttcct |
350 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39915923 |
tcatttaattaatttaattaagtactactagctatagtatttgtcttccttcct |
39915870 |
T |
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