View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_25 (Length: 311)
Name: NF13995_low_25
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_25 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 14060341 - 14060641
Alignment:
| Q |
11 |
gaagaatctagtatatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccataccctgataattgttaactaaaa |
110 |
Q |
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| T |
14060341 |
gaagaatctagtatatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccataccctgataattgttaactaaaa |
14060440 |
T |
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| Q |
111 |
agttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctccatatatacatcaattg |
210 |
Q |
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| T |
14060441 |
agttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctccatatatacatcaattg |
14060540 |
T |
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| Q |
211 |
gtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatca |
310 |
Q |
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| T |
14060541 |
gtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatca |
14060640 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
14060641 |
t |
14060641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 14048970 - 14049268
Alignment:
| Q |
11 |
gaagaatctagtatatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccataccctgataattgttaactaaaa |
110 |
Q |
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| T |
14048970 |
gaagaatctagtatatgaaatggtttaggatttttcaatggaatcaatgtcattccataacgtttacatgcacccataccctgataattgctaactaaaa |
14049069 |
T |
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| Q |
111 |
agttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctccatatatacatcaattg |
210 |
Q |
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| T |
14049070 |
aattcaaatcaatgcctcttgcattgcatataatctcaagcatttggtatggaagttggttctccaacaacttaacatctctccatatgtacatcaattg |
14049169 |
T |
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| Q |
211 |
gtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatc |
309 |
Q |
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| T |
14049170 |
atcaaacttaagatttagcccttcaggatattggtcatcgacattttccataaaatgcagcaaggaacatccatccacgaacaatatccaagcaagatc |
14049268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 15921048 - 15920871
Alignment:
| Q |
134 |
ttgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctccatatatacatcaattggtcaaacttaagatttagccctt |
233 |
Q |
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||||||| |||||||||||||| || |||||| |||||||||||||| | |||||||||||| | ||||| ||||||||||||||| ||||| | | |
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| T |
15921048 |
ttgcatagaatctcaagcattttgtttggaagctggttctctaacaaattagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcat |
15920949 |
T |
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| Q |
234 |
cgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatcat |
311 |
Q |
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| T |
15920948 |
ccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatcat |
15920871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 15900139 - 15899843
Alignment:
| Q |
15 |
aatctagtatatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccataccctgataattgttaactaaaaagtt |
114 |
Q |
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|||| |||| |||||| || ||| |||||| |||| | | ||||| ||||||| ||||||||||||||||| | | ||||||||| |||||| | |
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| T |
15900139 |
aatcaagtaaatgaaagggcttatgattttccaattggagcattgccattccaagtcgtttgcatgcacccattgcaaaagaattgttaattaaaaaatc |
15900040 |
T |
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| Q |
115 |
caaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctccatatatacatcaattggtca |
214 |
Q |
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| T |
15900039 |
caaatcaacactcgtttcttcgcatagaatctcaagcattatttttggaagttgattctccaacaaaaaagtatctctccatatgtgcatcagttggtca |
15899940 |
T |
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| Q |
215 |
aacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatcat |
311 |
Q |
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| T |
15899939 |
aacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatcat |
15899843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 15874010 - 15874226
Alignment:
| Q |
96 |
aattgttaactaaaaagttcaaatcaatgcctctttcattgcatataatctcaagcatt-tggtatggaagttggttctctaacaacgaaacatctctcc |
194 |
Q |
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||||||||| |||||| | ||||||||| || |||| | ||||| ||||||||||||| | | |||||||| ||||| ||||| || |||||||| |
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| T |
15874010 |
aattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttgggaagttgattctccaacaataaagtatctctcc |
15874109 |
T |
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| Q |
195 |
atatatacatcaattggtcaaacttaagatttagccc-ttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaaca |
293 |
Q |
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| T |
15874110 |
atatgtgcatcagttggtcaaacttaaggtttagggcattcgggc-attggtcatcaacatttcccataaagtgtagcaaagaacatccatccacaaaca |
15874208 |
T |
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| Q |
294 |
atatccaagcaagatcat |
311 |
Q |
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| T |
15874209 |
atatccaagcaagatcat |
15874226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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