View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_low_34 (Length: 226)

Name: NF13995_low_34
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_low_34
NF13995_low_34
[»] chr2 (5 HSPs)
chr2 (13-226)||(7746318-7746531)
chr2 (7-226)||(7711061-7711280)
chr2 (13-226)||(7733371-7733584)
chr2 (13-226)||(7725949-7726162)
chr2 (8-226)||(7699023-7699256)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 7746318 - 7746531
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  7746318 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaaaactaccaag 7746417  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7746418 tttgtttgaagatggtaaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcct 7746517  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7746518 aatatacctttact 7746531  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 7711280 - 7711061
Alignment:
Q  7 cagtagatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagct 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |  ||    
T  7711280 cagtaaatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccacctatgaatatact 7711181  T
Q  107 accaagtttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgca 206  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  7711180 accaagtttgtttgaagatggtaaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgca 7711081  T
Q  207 aggcctaatatacctttact 226  Q
    ||||||||||||||||||||    
T  7711080 aggcctaatatacctttact 7711061  T

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Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 7733584 - 7733371
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||| ||||||| ||||||||   ||||||||| |||||||| ||    ||||  ||||||||| |||||||  ||||||||    
T  7733584 atattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaagactaccaag 7733485  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
     |||||||||||||||||||| ||| ||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7733484 attgtttgaagatggtaaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcct 7733385  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7733384 aatatacctttact 7733371  T

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Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 7726162 - 7725949
Alignment:
Q  13 atattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggcaaagttagatggtaccccacccatgaaaaagctaccaag 112  Q
    |||||||||||||||||||||| ||||||| ||||||||   ||||||||| |||||||| ||    ||||  ||||||||| || ||||  ||||||||    
T  7726162 atattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaataaaaagactaccaag 7726063  T
Q  113 tttgtttgaagatggtaaacagagaacaaacttgttaagaattttttgcggagctaatgaaagctgttttggtgatgaaagtggtgttcttgcaaggcct 212  Q
     |||||||||||||||||||| ||| ||||||||||||||| |||    |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7726062 attgtttgaagatggtaaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcct 7725963  T
Q  213 aatatacctttact 226  Q
    ||||||||||||||    
T  7725962 aatatacctttact 7725949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 7699256 - 7699023
Alignment:
Q  8 agtagatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttggca----aagttagat--ggtaccccacccatgaaa 101  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  ||||||||| |||||||  |    || || | |  |||| |||||| |||||     
T  7699256 agtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaagaactttgttggggtatcccaccaatgaag 7699157  T
Q  102 aagctaccaagt------ttgtttgaagatggtaaacagagaacaaacttgttaagaattttttg---cggagctaatgaaagctgttttggtgatgaaa 192  Q
    | ||||||||||      |||||||||||||||||||| ||| |||| |||||| |||  || ||    | || | |||||||||||||||||  |||||    
T  7699156 aggctaccaagtcctttcttgtttgaagatggtaaacaaagagcaaatttgttaggaagcttatgagaagaagatgatgaaagctgttttggtagtgaaa 7699057  T
Q  193 gtggtgttcttgcaaggcctaatatacctttact 226  Q
    ||  ||||||||||||||||||||| ||||||||    
T  7699056 gttttgttcttgcaaggcctaatatccctttact 7699023  T

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