View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13995_low_6 (Length: 594)

Name: NF13995_low_6
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13995_low_6
NF13995_low_6
[»] chr5 (3 HSPs)
chr5 (18-594)||(2432275-2432869)
chr5 (474-562)||(27328789-27328877)
chr5 (474-524)||(20135641-20135691)
[»] chr1 (7 HSPs)
chr1 (474-546)||(35005183-35005255)
chr1 (474-567)||(19932760-19932853)
chr1 (477-560)||(18741971-18742054)
chr1 (474-524)||(10668285-10668335)
chr1 (474-524)||(20004140-20004190)
chr1 (478-520)||(22324956-22324998)
chr1 (474-546)||(18944703-18944775)
[»] chr2 (3 HSPs)
chr2 (474-560)||(10543735-10543821)
chr2 (474-511)||(44521434-44521471)
chr2 (474-519)||(24200678-24200723)
[»] chr3 (4 HSPs)
chr3 (474-524)||(45139526-45139576)
chr3 (474-524)||(45786264-45786314)
chr3 (478-575)||(8324998-8325095)
chr3 (474-555)||(46421054-46421135)
[»] chr7 (1 HSPs)
chr7 (474-527)||(22699015-22699068)
[»] chr6 (1 HSPs)
chr6 (474-546)||(12221943-12222015)
[»] chr4 (1 HSPs)
chr4 (479-527)||(16494259-16494307)


Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 2432869 - 2432275
Alignment:
Q  18 tgtttgtgattgaattgaaattgacagtgaccaaagcacgcagaagggatacagttcacttctttcatttacagtgactgatatcaatagtaccgtgact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2432869 tgtttgtgattgaattgaaattgacagtgaccaaagcacgcagaagggatacagttcacttctttcatttacagtgactgatatcaatagtactgtgact 2432770  T
Q  118 aagctaatggcattaggagctgaacttgatggacctatcaaatatgaagtccatggcaaggtactgtcatcaaatcatgcaatgcaatgctactcctttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2432769 aagctaatggcattaggagctgaacttgatggacctatcaaatatgaagtccatggcaaggtactgtcatcaaatcatgcaatgcaatgctactactttt 2432670  T
Q  218 ggaaattattcacagcattgataattagtagtactttgaagaagataaagtttgatgtgatttatcttgtgaacaggttgcagctatgaggtgcattgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432669 ggaaattattcacagcattgataattagtagtactttgaagaagataaagtttgatgtgatttatcttgtgaacaggttgcagctatgaggtgcattgat 2432570  T
Q  318 ggacatctcttaggcctctatgaacctgtttaagatacctgaagagattcactatcaccaacagtatca--nnnnnnnnnaactattgaaattgtaattt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||           ||||||||||||||||||||    
T  2432569 ggacatctcttaggcctctatgaacctgtttaagatacctgaagagattcactatcaccaatagtatcatttttttttttaactattgaaattgtaattt 2432470  T
Q  416 gagaggtgccctagcgcagcggtaaagttgttg----------------tacgggttcaaggtctaggaacagttgtaaaaaacaaggtaagggtgcata 499  Q
    |||||||||||||||||||||||||||||||||                |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  2432469 gagaggtgccctagcgcagcggtaaagttgttgtacgcgactgaaatgttacgggttcaaggtttaggaacagttgtaaaaaacaaggcaagggtgcata 2432370  T
Q  500 taatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgcatcaggttatccttttaatgaaattatagtataat 594  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2432369 taatacaccaaaaatggtggaaccccttaccgtatcctacgtatgcgagaactttattgcatcaggttatccttttaatgaaattataatataat 2432275  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 562
Target Start/End: Original strand, 27328789 - 27328877
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgcatc 562  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||| |||| || ||| | ||| |||||||| || ||||| ||||||    
T  27328789 tgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgggaccccttcccgaaccctgcgtatgcgggagctttaatgcatc 27328877  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Original strand, 20135641 - 20135691
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccc 524  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||| ||||    
T  20135641 tgtaaaaaacaaggtaaggctgcgtacaatacaccaataatggtgggaccc 20135691  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 546
Target Start/End: Original strand, 35005183 - 35005255
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcg 546  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||| |||| || ||| | ||| ||||||||    
T  35005183 tgtaaaaaacagggtaaggctgcatacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcg 35005255  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 567
Target Start/End: Complemental strand, 19932853 - 19932760
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgcatcaggtt 567  Q
    ||||||||||| ||||||| ||| || ||||||||||||||||||| |||| || ||| | ||| ||||||| ||| | ||| |||| ||||||    
T  19932853 tgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcaagatcattagtgcaccaggtt 19932760  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 18742054 - 18741971
Alignment:
Q  477 aaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgca 560  Q
    |||||||| ||||||| ||| || ||||||||||||||||||| |||| || ||  | ||| ||||||||||| ||||| ||||    
T  18742054 aaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccagaccctgcgtatgcgagagctttagtgca 18741971  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Original strand, 10668285 - 10668335
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccc 524  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||| ||||    
T  10668285 tgtaaaaaacaaggtaaggttgcgtacaatacaccaataatggtgggaccc 10668335  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 20004190 - 20004140
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccc 524  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||| ||||    
T  20004190 tgtaaaaaacaaggtaaggctgcgtacaatacaccaataatggtgggaccc 20004140  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Original strand, 22324956 - 22324998
Alignment:
Q  478 aaaaacaaggtaagggtgcatataatacaccaaaaatggtgga 520  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||    
T  22324956 aaaaacagggtaaggctgcatacaatacaccaaaaatggtgga 22324998  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 546
Target Start/End: Original strand, 18944703 - 18944775
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcg 546  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||| |||| || ||| | ||| ||||||||    
T  18944703 tgtaaaaaacagggtaaggctgcgtacaatacaccaacaatggtgggaccccttcccggaccctgcgtatgcg 18944775  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 560
Target Start/End: Original strand, 10543735 - 10543821
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgca 560  Q
    ||||||||||| ||||||| ||| || ||||||||||||||||||| |||| || ||| | ||| |||||||| || ||||| ||||    
T  10543735 tgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgca 10543821  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 44521471 - 44521434
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaa 511  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  44521471 tgtaaaaaacaaggtaaggctgcatataatacaccaaa 44521434  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 24200723 - 24200678
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtgg 519  Q
    ||||||||||| ||||||| ||| || |||||||||||||||||||    
T  24200723 tgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgg 24200678  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 45139576 - 45139526
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccc 524  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||| ||||    
T  45139576 tgtaaaacacagggtaaggctgcatacaatacaccaaaaatggtgggaccc 45139526  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 45786314 - 45786264
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccc 524  Q
    ||||||||||| ||||||| ||| || ||||||||||||||||||| ||||    
T  45786314 tgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccc 45786264  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 575
Target Start/End: Complemental strand, 8325095 - 8324998
Alignment:
Q  478 aaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaactttattgcatcaggttatcctttt 575  Q
    |||| |||||| ||| ||| || ||||||| ||||||  ||||||  ||| ||| | | | ||||||||||||||||| |||||||| ||||||||||    
T  8325095 aaaatcaaggtgaggctgcgtacaatacactaaaaataatggaactttttcccgaaccttgcgtatgcgagaactttagtgcatcagattatcctttt 8324998  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 555
Target Start/End: Complemental strand, 46421135 - 46421054
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcgagaacttta 555  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||| |||| || ||| | ||| |||||||| || |||||    
T  46421135 tgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagcttta 46421054  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 527
Target Start/End: Complemental strand, 22699068 - 22699015
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaacccttt 527  Q
    ||||||||||| ||||||  ||| || ||||||||||||||||||| |||||||    
T  22699068 tgtaaaaaacagggtaagactgcgtacaatacaccaaaaatggtgggacccttt 22699015  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 546
Target Start/End: Complemental strand, 12222015 - 12221943
Alignment:
Q  474 tgtaaaaaacaaggtaagggtgcatataatacaccaaaaatggtggaaccctttaccgtatcctacgtatgcg 546  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||| |||| || ||| | ||| ||||||||    
T  12222015 tgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcg 12221943  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 16494259 - 16494307
Alignment:
Q  479 aaaacaaggtaagggtgcatataatacaccaaaaatggtggaacccttt 527  Q
    |||||| ||||| | |||||| ||||||||||||||||||| |||||||    
T  16494259 aaaacagggtaaagctgcatacaatacaccaaaaatggtgggacccttt 16494307  T

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