View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13995_low_7 (Length: 587)
Name: NF13995_low_7
Description: NF13995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13995_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 181 - 571
Target Start/End: Complemental strand, 32941041 - 32940651
Alignment:
| Q |
181 |
aaatgtgtttcatgagtcattttgttaaagctgaatttagagaatcttgaatatacnnnnnnnnnnnngaagaaaatctt-------actttgaaattcc |
273 |
Q |
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| T |
32941041 |
aaatgtgtttcatgagtcattttgttaaagctgaatttagagaatcttgaatatacttttttctttttgaagaaaatcttgaataatactttgaaattcc |
32940942 |
T |
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| Q |
274 |
ctcattttataaagagaaacacttgatggtctttataattttttcaatccctcgtccttttgacccaaatatttagaattcttatttggaatttggaacc |
373 |
Q |
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| T |
32940941 |
ctcattttataaat------------tggtctttataattttttcaatccctcgtccttttgacccaaatatttagaattcttatttggaatttggaacc |
32940854 |
T |
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| Q |
374 |
acatttcttttaataattctatttttccttcaaaattcatgacattataaaaatcacccaacattaaaccagtaattactttgtccact-nnnnnnntac |
472 |
Q |
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| T |
32940853 |
acatttcttttgatatttctatttttccttcaaaattcatgacattataaaaatcacccaacattaaaccagtaattactttgtccactaaaaaaaatac |
32940754 |
T |
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| Q |
473 |
tcatgaatatggaaattcagttaaagtgtcaagattgcttagaattttaaattatctaaattttttattgac----ttcattcaaccacattttggttgt |
568 |
Q |
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| T |
32940753 |
ttatgaatatggaaattcagttaaagtgtcaagattgcttagaatttttaattatctaaatttttttatgacttcattcattcaaccacattttggttgt |
32940654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32941198 - 32941058
Alignment:
| Q |
1 |
agatggtttagtaattagcaataaagacgtaagcattccaaatttctcccaggtaatataattttgttataaggagataatataattttagtttgtaatt |
100 |
Q |
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| T |
32941198 |
agatggtttagtaattagcaataaagacgtcagtattccaaatttctcccaggtaatataattttgttataaggagataatataattttagtttgtaatt |
32941099 |
T |
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| Q |
101 |
catattctatgagaaatatttgtttgaaatataaatttgga |
141 |
Q |
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| T |
32941098 |
caaattctatgtgaaatatttgtttgaaatataaatttgga |
32941058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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