View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13996_high_2 (Length: 310)
Name: NF13996_high_2
Description: NF13996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13996_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 52082201 - 52082483
Alignment:
| Q |
12 |
atcatcaaccaaactacaattctttctttaatatatgtcatgnnnnnnnnnnnnnnnncatgggaaaagtaaagattgaaatgttgtgatgaagataaca |
111 |
Q |
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| T |
52082201 |
atcatcaaccaaactacatttctttctttaatatatgtcatgaaaaagaaaaacaaaacatgggaaaagtaaagattgaaatgttgtgatgaagataaca |
52082300 |
T |
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| Q |
112 |
tttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagg |
211 |
Q |
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| T |
52082301 |
tttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagg |
52082400 |
T |
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| Q |
212 |
gagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcc |
294 |
Q |
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| T |
52082401 |
gagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcc |
52082483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 52092458 - 52092667
Alignment:
| Q |
73 |
gggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaata |
172 |
Q |
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| T |
52092458 |
gggaaaaatgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaata |
52092557 |
T |
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| Q |
173 |
aaggtttccacttgtcgtcactaggacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaa |
268 |
Q |
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| T |
52092558 |
aaggtttccacttgtcgtcact---acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaa |
52092654 |
T |
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| Q |
269 |
catcagcacacac |
281 |
Q |
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| T |
52092655 |
catcaacacacac |
52092667 |
T |
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