View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13996_low_1 (Length: 646)

Name: NF13996_low_1
Description: NF13996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13996_low_1
NF13996_low_1
[»] chr4 (2 HSPs)
chr4 (37-559)||(55335872-55336394)
chr4 (71-559)||(55330474-55330956)
[»] chr2 (25 HSPs)
chr2 (391-556)||(8431120-8431285)
chr2 (64-559)||(8405540-8406032)
chr2 (65-555)||(8375861-8376345)
chr2 (407-555)||(8439094-8439242)
chr2 (386-559)||(8411976-8412149)
chr2 (386-559)||(8434074-8434247)
chr2 (407-559)||(8395540-8395692)
chr2 (404-558)||(8417212-8417366)
chr2 (143-316)||(8403663-8403836)
chr2 (64-216)||(8395880-8396032)
chr2 (59-216)||(8430806-8430963)
chr2 (65-216)||(8411661-8411812)
chr2 (65-216)||(8433759-8433910)
chr2 (253-316)||(8368100-8368163)
chr2 (253-316)||(8401247-8401310)
chr2 (253-316)||(8422824-8422887)
chr2 (65-216)||(8416745-8416896)
chr2 (271-316)||(8411867-8411912)
chr2 (271-316)||(8431018-8431063)
chr2 (271-316)||(8433965-8434010)
chr2 (445-534)||(8403959-8404048)
chr2 (275-316)||(8416952-8416993)
chr2 (271-347)||(8395749-8395825)
chr2 (410-526)||(8417081-8417197)
chr2 (257-301)||(8429632-8429676)
[»] scaffold1738 (1 HSPs)
scaffold1738 (65-216)||(26-177)


Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 37 - 559
Target Start/End: Original strand, 55335872 - 55336394
Alignment:
Q  37 ataagaatgtaatgttatctaaaaaagtttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55335872 ataagaatgtaatgttatctaaaaaagtttgctggcaaattcatctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagc 55335971  T
Q  137 tcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatac 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55335972 tcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatac 55336071  T
Q  237 tctctcccaacatcttaaagaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccat 336  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336072 tctctccaaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccat 55336171  T
Q  337 tgatcctgccatcacaggaaccatagctgaccaaaatccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgct 436  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336172 tgatcctgccatcacaggtaccatagctgaccaaaatccgtcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgct 55336271  T
Q  437 attgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttcca 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336272 attgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttcca 55336371  T
Q  537 tttctaattcttcactccatcca 559  Q
    |||||||||||||||||||||||    
T  55336372 tttctaattcttcactccatcca 55336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 71 - 559
Target Start/End: Original strand, 55330474 - 55330956
Alignment:
Q  71 gcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattt 170  Q
    ||||||||||| | | ||||||||| ||| | ||| | | | |||||||||||||| | ||| | |||||||||| ||||||| |||||||| |||||||    
T  55330474 gcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattt 55330573  T
Q  171 tcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccaccacagtt 270  Q
    |||||||||||| ||| |||||||||||  | || ||||||||||| || | |||    |||| | ||||| |||||| ||||| |||||||||||| ||    
T  55330574 tcatttcaaataactctccattttctctcatctcaaaatctttctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatt 55330673  T
Q  271 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagctgaccaa 370  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||| |||| | | ||  | | | ||| || ||||| | || ||| |||||||  |||    
T  55330674 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctg--caa 55330771  T
Q  371 aatccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatat 470  Q
     |   ||    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||| | |||||| |||| ||| ||||||||||    
T  55330772 cagaatt----gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatat 55330867  T
Q  471 ttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 559  Q
    |||||||||| ||||| |||||||| |||||  | || ||||||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  55330868 ttccaagtctttcataatcttcaatatctttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatcca 55330956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 391 - 556
Target Start/End: Original strand, 8431120 - 8431285
Alignment:
Q  391 aaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtct 490  Q
    ||||| ||| ||||| ||||||||||| | ||||||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| |||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  491 tcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccat 556  Q
    |||| |||||| |||||||  ||||||| ||| |||||||||||||||||||||||||||||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 64 - 559
Target Start/End: Original strand, 8405540 - 8406032
Alignment:
Q  64 tttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaat 163  Q
    |||||| ||||||||||||||  |||  |||||||||| | | | ||| |||||||| |||||||  || |||||||| ||||||||||| ||   |||     
T  8405540 tttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaa 8405639  T
Q  164 gccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccac 263  Q
    ||||||||||||||||||| ||| |||||||||||||| || |||||||||||  | |  ||   ||||||      | | ||||  || || || |||     
T  8405640 gccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttgaaaaaaccag 8405739  T
Q  264 cacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagc 363  Q
    || |   ||||||||||||||| ||||| ||||||||||||||||| ||||||  |||||||||| |||||| ||| || ||||  | |||||| |  ||    
T  8405740 cagaagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgc 8405839  T
Q  364 tgaccaaaatccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaat 463  Q
     | |||||   || |  | || || | ||||| ||| || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | ||||||     
T  8405840 ag-ccaaagaactac--cattgccaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaa 8405936  T
Q  464 gctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 559  Q
    ||||| ||||||||||| ||||| ||||||  |||||| |  ||||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8405937 gctatgtttccaagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8406032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 65 - 555
Target Start/End: Complemental strand, 8376345 - 8375861
Alignment:
Q  65 ttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 164  Q
    ||||||||||||||||| ||  | || |||||||||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| |    
T  8376345 ttgctggcaaattcatcaatttcgataccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaag 8376246  T
Q  165 ccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccacc 264  Q
    |||||||||||||||||| ||| |||||||||||||| || |||||||||||  | |  ||    |||||      | | | ||  || ||||| |||||    
T  8376245 ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgaatcaattgaagtttctatcaagttgaagaaaccacc 8376146  T
Q  265 acagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagct 364  Q
    | |   ||||||||||||||| ||||| ||||||||||||||||||||||||  ||| ||| || |||||| ||| || ||||  | |||||| | |||     
T  8376145 agaagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaattacagaagccaatgaaccagccaaaagaggaacaaaagca 8376046  T
Q  365 gaccaaaatccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatg 464  Q
    | | || | ||        | ||||||||||  || || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | ||||||||    
T  8376045 gccaaagaaccac------tacctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatg 8375952  T
Q  465 ctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactcca 555  Q
    |||| ||||||||||| ||||| ||||||  |||||| |||||||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8375951 ctatgtttccaagtctgtcataatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactcca 8375861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 407 - 555
Target Start/End: Original strand, 8439094 - 8439242
Alignment:
Q  407 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 506  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| ||||    
T  8439094 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctct 8439193  T
Q  507 ttacaacttcaataacttccctcatttccatttctaattcttcactcca 555  Q
    |||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8439194 ttatcacttcaacaacttccctcatttccatttccaattctttactcca 8439242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 386 - 559
Target Start/End: Original strand, 8411976 - 8412149
Alignment:
Q  386 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 485  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8411976 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8412075  T
Q  486 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 559  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8412076 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8412149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 386 - 559
Target Start/End: Original strand, 8434074 - 8434247
Alignment:
Q  386 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 485  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8434074 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8434173  T
Q  486 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 559  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8434174 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 407 - 559
Target Start/End: Complemental strand, 8395692 - 8395540
Alignment:
Q  407 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 506  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8395692 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8395593  T
Q  507 ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 559  Q
    |||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8395592 ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8395540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 404 - 558
Target Start/End: Original strand, 8417212 - 8417366
Alignment:
Q  404 attgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttac 503  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| |    
T  8417212 attgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttc 8417311  T
Q  504 tctttacaacttcaataacttccctcatttccatttctaattcttcactccatcc 558  Q
    |||| |  ||||||   ||||||  |||||||||||||||||||| |||||||||    
T  8417312 tcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatcc 8417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 8403663 - 8403836
Alignment:
Q  143 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 242  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||| ||||||||||||| | |||||||||||| ||||   |   |||||   |||||     
T  8403663 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctttctcttcaataatttcttcaactgtctctt 8403762  T
Q  243 ccaacatcttaaagaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    |||| | || ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  8403763 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 8403836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 8396032 - 8395880
Alignment:
Q  64 tttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaat 163  Q
    |||||| ||||||||||||||  |||  |||||||||| | | | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   |||     
T  8396032 tttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaa 8395933  T
Q  164 gccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
    ||||||||||||||||||| ||| |||||||||||||| || |||||||||||    
T  8395932 gccattttcatttcaaatagctctccattttctcttttctctaaatctttctc 8395880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 8430806 - 8430963
Alignment:
Q  59 aaaagtttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaaca 158  Q
    |||| |||||||| ||||||||||||  |||  |||||||||| | | | ||| |||||||| |||||||  |||||||| || |||||| |||| ||      
T  8430806 aaaattttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactttttcccaatt 8430905  T
Q  159 tcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
     ||| ||||| ||||||||||||| ||| |||||||||||||| || |||||||||||    
T  8430906 gcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctc 8430963  T

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Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 8411661 - 8411812
Alignment:
Q  65 ttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 164  Q
    ||||||||||||||||||||  | || | |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |    
T  8411661 ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag 8411760  T
Q  165 ccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
    ||||||||| |||||||| ||| |||||||||||||| || |||||||||||    
T  8411761 ccattttcaattcaaatagctctccattttctcttttctctaaatctttctc 8411812  T

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Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 8433759 - 8433910
Alignment:
Q  65 ttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 164  Q
    ||||||||||||||||||||  | || | |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |    
T  8433759 ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag 8433858  T
Q  165 ccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
    ||||||||| |||||||| ||| |||||||||||||| || |||||||||||    
T  8433859 ccattttcaattcaaatagctctccattttctcttttctctaaatctttctc 8433910  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 8368100 - 8368163
Alignment:
Q  253 aaagaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8368100 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8368163  T

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Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 8401310 - 8401247
Alignment:
Q  253 aaagaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8401310 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8401247  T

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Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 8422887 - 8422824
Alignment:
Q  253 aaagaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8422887 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8422824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 8416745 - 8416896
Alignment:
Q  65 ttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 164  Q
    ||||||| ||||||||||||  |||  ||||| |||| ||| | ||| |||||||  ||| |||  || ||||| || ||| ||||||| ||   ||| |    
T  8416745 ttgctggaaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgtggcacgttccctcagctctgatacatttcttcccaattgcaaag 8416844  T
Q  165 ccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
    |||||||||||||||||| ||| |||||||||||||| || |||||||||||    
T  8416845 ccattttcatttcaaatagctctccattttctcttttctctaaatctttctc 8416896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 8411867 - 8411912
Alignment:
Q  271 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8411912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 8431018 - 8431063
Alignment:
Q  271 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 8433965 - 8434010
Alignment:
Q  271 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8434010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
Q  445 actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc 534  Q
    ||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| |||||||    
T  8403959 actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc 8404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 8416952 - 8416993
Alignment:
Q  275 tacatttcaaacaccataccaacttgtccaccatgctcaaaa 316  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8416993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 8395825 - 8395749
Alignment:
Q  271 tctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgcca 347  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||  ||| |||||| |||||| ||| || ||||    
T  8395825 tctatacatttcaaaaaccatgccaatttgtccaccatgttcaaaagtatttattgcagaagccaatgaaccagcca 8395749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 526
Target Start/End: Original strand, 8417081 - 8417197
Alignment:
Q  410 gcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactcttta 509  Q
    |||||||| ||||||||||| ||||| ||||| | ||||||||  | |||||| ||||| |||||||| || | ||| ||||||   ||||| |||||||    
T  8417081 gcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctcttta 8417180  T
Q  510 caacttcaataacttcc 526  Q
      ||||||| |||||||    
T  8417181 tcacttcaacaacttcc 8417197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 8429632 - 8429676
Alignment:
Q  257 aatccaccacagtttctatacatttcaaacaccataccaacttgt 301  Q
    ||||||| ||||||||||||||| | ||||| |||||||||||||    
T  8429632 aatccactacagtttctatacatctgaaacatcataccaacttgt 8429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 177 - 26
Alignment:
Q  65 ttgctggcaaattcatctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 164  Q
    ||||||||||||||||||||  |||  ||||| |||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| |    
T  177 ttgctggcaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaag 78  T
Q  165 ccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 216  Q
    |||||||||||||||||| ||| |||||||||||||| || |||||||||||    
T  77 ccattttcatttcaaatagctctccattttctcttttctctaaatctttctc 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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