View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13997_high_1 (Length: 972)

Name: NF13997_high_1
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13997_high_1
NF13997_high_1
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-955)||(13090-14044)
[»] chr3 (1 HSPs)
chr3 (822-910)||(43010780-43010867)


Alignment Details
Target: scaffold0024 (Bit Score: 907; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 907; E-Value: 0
Query Start/End: Original strand, 1 - 955
Target Start/End: Original strand, 13090 - 14044
Alignment:
Q  1 tatctgaatctctcatttcctttggttatctacaatcctcttctgatttttccctttttacaaaatttaaagattcttcatttactgcattgttagtata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13090 tatctgaatctctcatttcctttggttatctacaatcctcttctgatttttccctttttacaaaatttaaagattcttcatttactacattgttagtata 13189  T
Q  101 tgttgatgacattgttttagctggaaatgatatatctgaaatccaacatgttaaatgttttcttaatgatcgttttaaaatcaaagaccttggttcctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13190 tgttgatgacattgttttagctggaaatgatatatctgaaatccaacatgttaaatgttttcttattgatcgttttaaaatcaaagaccttggttcctta 13289  T
Q  201 cgatattttctaggtcttgaggttgctagaagcaaacaaggcattttacttaatcaaagaaaatatactcttgaacttttagaggatagtggtaatcttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13290 cgatattttctaggtcttgaggttgctagaagcaaacaaggcattttacttaatcaaagaaaatatactcttgaacttttagaggatagtggtaatcttg 13389  T
Q  301 ctgtaaaatccactcttactccttatgatatttctttaaaactccacaattctgattcgtccctttacaatgatgaaactaaatatagaagactcatagg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  13390 ctgtaaaatccactcttactccttatgatatttctttaaaactccacaattctgattcgcccctttacaatgatgaaactcaatatagaagactcatagg 13489  T
Q  401 caaacttatttatttaactactactcgtcctgatatatcctttgttattcaacaattaagccaatttgtttcgaaacctcagcaagttcactatcaggct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490 caaacttatttatttaactactactcgtcctgatatatcctttgctgttcaacaattaagccaatttgtttcgaaacctcagcaagttcactatcaggct 13589  T
Q  501 gctattagagttttacaatatctgaaaactgcccctaccaaaggattattctactcagcaacttctaatttgaaactttctggttttgcagattctgatt 600  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13590 gctattagagttttacaatatctgaaaactgcccctgccaaaggattattctactcagcaacttctaatttgaaactttctagttttgcagattctgatt 13689  T
Q  601 gggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcaatcgtctc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13690 gggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcgatcgtctc 13789  T
Q  701 caaatcaagctcagaagctgaatatcgtgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcacctctctttctct 800  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13790 caaatcaagctcagaagctgaatatcgcgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcacctctctttctct 13889  T
Q  801 tctcctgcttctgttttctgcgacaataaatcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcaca 900  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13890 tctcctgcttctgttttctgcgacaataaatcagccatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcaca 13989  T
Q  901 tcattagagagaagattcaaaatggcctgctgcgactatttcccataccttctgc 955  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13990 tcattagagagaagattcaaaatggtctgctgcgactatttcccataccttctgc 14044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 822 - 910
Target Start/End: Complemental strand, 43010867 - 43010780
Alignment:
Q  822 gacaataaatcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcacatcattagaga 910  Q
    |||||| ||||||  ||| |||| || |||||| ||| || ||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  43010867 gacaatgaatcagacatcgaccttgcccataacacca-ttaccatgaacgtattaaacacgttgaaatagattgtcacatcatcagaga 43010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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