View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13997_high_13 (Length: 305)
Name: NF13997_high_13
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13997_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 3711739 - 3712012
Alignment:
| Q |
19 |
tggggtattatgcaaaatagaggattttcaagacatcaaagaggagtacactttcaggttctaaaccaactcaagtggannnnnnngatgcaaaactgtt |
118 |
Q |
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| T |
3711739 |
tggggtattatgcaaaatagaggattttccagccatcaaagaggagtgcactttcaggttctaaaccaactcaagtggattttttcaatgcaaatctgtt |
3711838 |
T |
|
| Q |
119 |
tcacgatgacatgcatat-ttttaagttcatatcttaattctcatactgtattttagaattcaatgaaagtaaatatgtatataatgtagatatattttt |
217 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3711839 |
tcacgataacatgcatatcttttaagttcatatcttaattctcatactgtattttagaattcaatgaaagtaaatatgtatataatgtaaatatattttt |
3711938 |
T |
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| Q |
218 |
aataactaacac---tattaaattacgatgtaattctttttcttttggtgatcaattatgatgtagtttctttt |
288 |
Q |
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||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3711939 |
aataattaacactaatattaaattacaatgtaattatttttcttttggtgatcaattatgatgtagtttctttt |
3712012 |
T |
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