View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13997_high_16 (Length: 242)
Name: NF13997_high_16
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13997_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27321276 - 27321045
Alignment:
| Q |
1 |
gaactataaataaaatcaaaattttaattctatgaacacaaagattagctccatcattatacataaaataaacaattcaatagtaaacttattttcatcc |
100 |
Q |
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| T |
27321276 |
gaactataaataaaatcaaaattttaattctatgaacacgaagattagctccatcattatacataaaataaacaattcaatagtaaacttattttcaccc |
27321177 |
T |
|
| Q |
101 |
acacccaatctcaatcatataattttaatactcaatcaatttaaactaaacgatccgaagaacgttctccagcatcaactttgtccataacattcattgt |
200 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
27321176 |
acacccaatctcaatcat---aatttaatactcaatcaatttaaactaaacgatccgaagaacgttctccagcatcaactttgctcataacacccattgt |
27321080 |
T |
|
| Q |
201 |
tgcacttgcattgttcccatcctttgttcatctca |
235 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
27321079 |
tgcacttgcattgttcccatcctttgttgatctca |
27321045 |
T |
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