View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13997_high_9 (Length: 390)

Name: NF13997_high_9
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13997_high_9
NF13997_high_9
[»] chr4 (9 HSPs)
chr4 (249-363)||(41223419-41223533)
chr4 (179-222)||(14254702-14254745)
chr4 (171-222)||(49013528-49013579)
chr4 (171-213)||(4825104-4825146)
chr4 (171-228)||(44917620-44917677)
chr4 (171-211)||(1829034-1829074)
chr4 (129-157)||(11987568-11987596)
chr4 (108-157)||(44917563-44917614)
chr4 (129-157)||(49013584-49013612)
[»] chr1 (8 HSPs)
chr1 (249-363)||(32573243-32573357)
chr1 (171-222)||(13014563-13014614)
chr1 (179-228)||(41804385-41804434)
chr1 (129-157)||(13014620-13014648)
chr1 (129-157)||(14292565-14292593)
chr1 (171-211)||(20748597-20748637)
chr1 (129-157)||(20754678-20754706)
chr1 (171-211)||(50874054-50874094)
[»] scaffold0039 (1 HSPs)
scaffold0039 (249-363)||(57174-57288)
[»] chr8 (8 HSPs)
chr8 (249-363)||(34924498-34924612)
chr8 (267-363)||(14112111-14112207)
chr8 (171-219)||(5222736-5222784)
chr8 (171-211)||(44625307-44625347)
chr8 (171-222)||(4053260-4053311)
chr8 (171-225)||(13013247-13013301)
chr8 (194-238)||(30465867-30465911)
chr8 (129-157)||(30465938-30465966)
[»] chr7 (13 HSPs)
chr7 (249-361)||(19847979-19848091)
chr7 (171-228)||(40804510-40804567)
chr7 (171-222)||(21403325-21403376)
chr7 (171-222)||(29165215-29165266)
chr7 (171-213)||(40366998-40367040)
chr7 (173-213)||(1002930-1002970)
chr7 (129-157)||(1730468-1730496)
chr7 (171-223)||(9328063-9328115)
chr7 (171-211)||(29128139-29128179)
chr7 (129-157)||(35471681-35471709)
chr7 (129-157)||(43185142-43185170)
chr7 (129-157)||(47273008-47273036)
chr7 (129-157)||(48165108-48165136)
[»] chr6 (10 HSPs)
chr6 (171-220)||(34327777-34327826)
chr6 (171-218)||(8440409-8440456)
chr6 (171-222)||(33858597-33858648)
chr6 (171-213)||(5266162-5266204)
chr6 (171-213)||(11370016-11370058)
chr6 (171-211)||(1336674-1336714)
chr6 (129-157)||(7268912-7268940)
chr6 (171-211)||(13691486-13691526)
chr6 (129-157)||(17545238-17545266)
chr6 (171-223)||(21153980-21154032)
[»] chr2 (12 HSPs)
chr2 (108-157)||(37342705-37342756)
chr2 (171-222)||(6827735-6827786)
chr2 (171-222)||(16064615-16064666)
chr2 (179-218)||(39541753-39541792)
chr2 (171-213)||(14786628-14786670)
chr2 (171-212)||(5475458-5475499)
chr2 (171-228)||(21971212-21971269)
chr2 (103-157)||(39007959-39008015)
chr2 (108-157)||(8811144-8811195)
chr2 (129-157)||(26336390-26336418)
chr2 (129-157)||(28872223-28872251)
chr2 (129-157)||(45133863-45133891)
[»] chr5 (6 HSPs)
chr5 (171-222)||(6516629-6516680)
chr5 (171-211)||(16425185-16425225)
chr5 (129-157)||(26402909-26402937)
chr5 (171-211)||(31199923-31199963)
chr5 (129-157)||(32400846-32400874)
chr5 (129-157)||(41044857-41044885)
[»] chr3 (8 HSPs)
chr3 (171-220)||(2618454-2618503)
chr3 (129-157)||(1631204-1631232)
chr3 (174-222)||(7922958-7923006)
chr3 (129-157)||(33463380-33463408)
chr3 (129-157)||(37169757-37169785)
chr3 (171-211)||(41187378-41187418)
chr3 (129-157)||(49083423-49083451)
chr3 (129-157)||(55379108-55379136)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 41223419 - 41223533
Alignment:
Q  249 caattaattagggaaaagaagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaa 348  Q
    ||||||||| || ||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  41223419 caattaatttggaaaaagaagaagaaatttgggttcataaataacaagaaataacaatagaaatcttggttcaaaaattagaagaagcatcaaatatgaa 41223518  T
Q  349 gatgaagaaatatga 363  Q
    |||||||||||||||    
T  41223519 gatgaagaaatatga 41223533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 14254745 - 14254702
Alignment:
Q  179 aattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    |||||||||||| | |||||||||||||||||||| ||||||||    
T  14254745 aattgtgcagaaatgtatagaatattgtaaaaatcactccaaaa 14254702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 49013579 - 49013528
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | ||| |||||||||||||||| ||||||||    
T  49013579 tttaatgaaattgtgcagaaatttatggaatattgtaaaaatcactccaaaa 49013528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 4825104 - 4825146
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||||| ||||||||| || ||||||||||||||||||||||    
T  4825104 tttaatgaaattgtgcataaatatatagaatattgtaaaaatc 4825146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 44917620 - 44917677
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaataatta 228  Q
    ||||||| |||||| ||||| | | ||||||||||||||| || ||||||||||||||    
T  44917620 tttaatgaaattgtacagaaatgtgtagaatattgtaaaagtctctccaaaataatta 44917677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 1829034 - 1829074
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  1829034 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 1829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 11987596 - 11987568
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  11987596 tggtccctatttttaagtaaatttttgta 11987568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 44917563 - 44917614
Alignment:
Q  108 ataaaaattttaatcactacc--tggtccctatttttaagtaaatttttgta 157  Q
    |||||| ||| ||||||||||  |||||||||||||||||| ||||||||||    
T  44917563 ataaaattttcaatcactaccattggtccctatttttaagttaatttttgta 44917614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 49013612 - 49013584
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  49013612 tggtccctatttttaagtaaatttttgta 49013584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 32573357 - 32573243
Alignment:
Q  249 caattaattagggaaaagaagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaa 348  Q
    ||||||||| || ||||||||||||||| ||| |||| |||||||||||| |||||||| ||||||||||||| | | ||| ||||||||||||||||||    
T  32573357 caattaatttggaaaaagaagaagaaatatgggttcataaataacaagaaataacaatagaaatcttggttcaaatattagtagaagcatcaaatatgaa 32573258  T
Q  349 gatgaagaaatatga 363  Q
    |||||||||||||||    
T  32573257 gatgaagaaatatga 32573243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 13014614 - 13014563
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||| ||||||| | |||||||||||||||||||| ||||||||    
T  13014614 tttaatgaaattatgcagaaatgtatagaatattgtaaaaatcactccaaaa 13014563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41804385 - 41804434
Alignment:
Q  179 aattgtgcagaactatatagaatattgtaaaaatcgctccaaaataatta 228  Q
    |||||||||||| | | |||||||||||||||||| |||||||| |||||    
T  41804385 aattgtgcagaaatgtgtagaatattgtaaaaatctctccaaaaaaatta 41804434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 13014648 - 13014620
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  13014648 tggtccctatttttaagtaaatttttgta 13014620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 14292593 - 14292565
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  14292593 tggtccctatttttaagtaaatttttgta 14292565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 20748597 - 20748637
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  20748597 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 20748637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 20754706 - 20754678
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  20754706 tggtccctatttttaagtaaatttttgta 20754678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 50874054 - 50874094
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  50874054 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 50874094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 57288 - 57174
Alignment:
Q  249 caattaattagggaaaagaagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaa 348  Q
    ||||||||| || |||||| |||||||| ||| |||| |||||||||||| |||||||| ||||||||||||| | | ||| ||||||||||||||||||    
T  57288 caattaatttggaaaaagatgaagaaatatgggttcataaataacaagaaataacaatagaaatcttggttcaaatattagtagaagcatcaaatatgaa 57189  T
Q  349 gatgaagaaatatga 363  Q
    |||||||||||||||    
T  57188 gatgaagaaatatga 57174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 34924498 - 34924612
Alignment:
Q  249 caattaattagggaaaagaagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaa 348  Q
    ||||||||| || |||||| |||||||| ||| |||| |||||||||||| |||||||| ||||||||||||| | | ||| ||||||||||||||||||    
T  34924498 caattaatttggaaaaagatgaagaaatatgggttcataaataacaagaaataacaatagaaatcttggttcaaatattagtagaagcatcaaatatgaa 34924597  T
Q  349 gatgaagaaatatga 363  Q
    |||||||||||||||    
T  34924598 gatgaagaaatatga 34924612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 14112111 - 14112207
Alignment:
Q  267 aagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaagatgaagaaatatga 363  Q
    |||||||||| ||| |||| |||||||||||| |||||||| ||||||||||||| | | |||  ||||||||||||||||||||||||||||||||    
T  14112111 aagaagaaatatgggttcataaataacaagaaataacaatagaaatcttggttcaaatattagttgaagcatcaaatatgaagatgaagaaatatga 14112207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 5222784 - 5222736
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctcca 219  Q
    ||||||| |||||||||||| ||| |||||||||||||||||| |||||    
T  5222784 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaatctctcca 5222736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 44625347 - 44625307
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  44625347 tttaatggaattgtgcagaaatatgtagaatattgtaaaaa 44625307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 4053260 - 4053311
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||  ||| |||||||||||||||||| ||||||||    
T  4053260 tttaatgaaattgtgcagacatatgtagaatattgtaaaaatcactccaaaa 4053311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 13013301 - 13013247
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaataa 225  Q
    ||||||| |||||||||||| | ||| ||||||| |||||||| |||||||||||    
T  13013301 tttaatgaaattgtgcagaaatttatggaatattataaaaatcactccaaaataa 13013247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 30465911 - 30465867
Alignment:
Q  194 tatagaatattgtaaaaatcgctccaaaataattaattttgtaac 238  Q
    |||||||||||||||||||| |||||||| ||||| |||| ||||    
T  30465911 tatagaatattgtaaaaatcactccaaaaaaattagttttttaac 30465867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 30465966 - 30465938
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  30465966 tggtccctatttttaagtaaatttttgta 30465938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 19848091 - 19847979
Alignment:
Q  249 caattaattagggaaaagaagaagaaatttggattcagaaataacaagaagtaacaataaaaatcttggttcagaaactagaagaagcatcaaatatgaa 348  Q
    ||||||||| || ||||||||||||||| ||| |||| |||||||||||| |||||||| ||||||||||||| | | ||| ||||| ||||||||||||    
T  19848091 caattaatttggaaaaagaagaagaaatatgggttcataaataacaagaaataacaatagaaatcttggttcaaatattagtagaagtatcaaatatgaa 19847992  T
Q  349 gatgaagaaatat 361  Q
    |||||||||||||    
T  19847991 gatgaagaaatat 19847979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 40804510 - 40804567
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaataatta 228  Q
    ||||||| |||||||||||| | |||||||||||||||||||| |||||||| |||||    
T  40804510 tttaatgaaattgtgcagaaatgtatagaatattgtaaaaatctctccaaaaaaatta 40804567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 21403325 - 21403376
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | | |||||||||||||||||| ||||||||    
T  21403325 tttaatgaaattgtgcagaaatgtgtagaatattgtaaaaatctctccaaaa 21403376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 29165215 - 29165266
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | |||||||||||||||||||| ||| ||||    
T  29165215 tttaatgaaattgtgcagaaatgtatagaatattgtaaaaatcactcaaaaa 29165266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 40367040 - 40366998
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||    
T  40367040 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaatc 40366998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 1002970 - 1002930
Alignment:
Q  173 taatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  1002970 taatgaaattgtgcagaaatgtatagaatattgtaaaaatc 1002930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 1730468 - 1730496
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  1730468 tggtccctatttttaagtaaatttttgta 1730496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 9328063 - 9328115
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaat 223  Q
    ||||||| || ||||||||| | |||||||||||||||||||| || ||||||    
T  9328063 tttaatgaaagtgtgcagaaatgtatagaatattgtaaaaatcacttcaaaat 9328115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 29128179 - 29128139
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  29128179 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 29128139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 35471681 - 35471709
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  35471681 tggtccctatttttaagtaaatttttgta 35471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 43185142 - 43185170
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  43185142 tggtccctatttttaagtaaatttttgta 43185170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 47273036 - 47273008
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  47273036 tggtccctatttttaagtaaatttttgta 47273008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 48165136 - 48165108
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  48165136 tggtccctatttttaagtaaatttttgta 48165108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 34327826 - 34327777
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaa 220  Q
    ||||||| |||||||||||| | |||||||||||||||||||| ||||||    
T  34327826 tttaatgaaattgtgcagaaatgtatagaatattgtaaaaatcactccaa 34327777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 8440456 - 8440409
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctcc 218  Q
    ||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  8440456 tttaatgaaattgtgcagaaatatatggaatattgtaaaaatcactcc 8440409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 33858648 - 33858597
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | ||| |||||||||||||||| ||||||||    
T  33858648 tttaatgaaattgtgcagaaatgtatggaatattgtaaaaatcactccaaaa 33858597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 5266162 - 5266204
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||    
T  5266162 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaatc 5266204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 11370016 - 11370058
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||    
T  11370016 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaatc 11370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 1336674 - 1336714
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  1336674 tttaatgaaattgtgcagaaatgtatagaatattgtaaaaa 1336714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 7268912 - 7268940
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  7268912 tggtccctatttttaagtaaatttttgta 7268940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 13691486 - 13691526
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  13691486 tttaatgaaattgtgcagaaatgtatagaatattgtaaaaa 13691526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 17545266 - 17545238
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  17545266 tggtccctatttttaagtaaatttttgta 17545238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 21153980 - 21154032
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaat 223  Q
    ||||||| |||||||||||| ||| || ||||||||||||||| ||| |||||    
T  21153980 tttaatgaaattgtgcagaaatatgtataatattgtaaaaatctctctaaaat 21154032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 37342756 - 37342705
Alignment:
Q  108 ataaaaattttaatcactacct--ggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||| |  |||||||||||| |||||||||||||||    
T  37342756 ataaaaattttaatcactacttttggtccctattttaaagtaaatttttgta 37342705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 6827735 - 6827786
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | ||| |||||||||||||||| ||||||||    
T  6827735 tttaatgaaattgtgcagaaatttattgaatattgtaaaaatcactccaaaa 6827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 16064615 - 16064666
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | ||| |||||||||||||||| ||||||||    
T  16064615 tttaatgaaattgtgcagaaatttatggaatattgtaaaaatcactccaaaa 16064666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 39541792 - 39541753
Alignment:
Q  179 aattgtgcagaactatatagaatattgtaaaaatcgctcc 218  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  39541792 aattgtgcagaaatgtatagaatattgtaaaaatcgctcc 39541753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 14786628 - 14786670
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatc 213  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||    
T  14786628 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaatc 14786670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 5475458 - 5475499
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaat 212  Q
    ||||||| |||||||||||| ||| |||||||||||||||||    
T  5475458 tttaatgaaattgtgcagaaatatttagaatattgtaaaaat 5475499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 21971212 - 21971269
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaataatta 228  Q
    ||||||| |||| ||||||| | ||| |||||||||||||||| |||||||| |||||    
T  21971212 tttaatgaaattatgcagaaatgtatggaatattgtaaaaatcactccaaaaaaatta 21971269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 39008015 - 39007959
Alignment:
Q  103 tgccaataaaaattttaatcactacct--ggtccctatttttaagtaaatttttgta 157  Q
    |||| |||||||||| ||||||||| |  ||||||||||||||||| ||||||||||    
T  39008015 tgcctataaaaatttcaatcactacttttggtccctatttttaagttaatttttgta 39007959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 8811144 - 8811195
Alignment:
Q  108 ataaaaattttaatcactacct--ggtccctatttttaagtaaatttttgta 157  Q
    |||||| ||| ||||||||| |  ||||||||||||||||||||||||||||    
T  8811144 ataaaattttcaatcactactttgggtccctatttttaagtaaatttttgta 8811195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 26336390 - 26336418
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  26336390 tggtccctatttttaagtaaatttttgta 26336418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 28872223 - 28872251
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  28872223 tggtccctatttttaagtaaatttttgta 28872251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 45133863 - 45133891
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  45133863 tggtccctatttttaagtaaatttttgta 45133891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 6516680 - 6516629
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    ||||||| |||||||||||| | ||| |||||||||||||||| ||||||||    
T  6516680 tttaatgaaattgtgcagaaatgtatggaatattgtaaaaatcactccaaaa 6516629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 16425225 - 16425185
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  16425225 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 16425185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 26402937 - 26402909
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  26402937 tggtccctatttttaagtaaatttttgta 26402909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 31199923 - 31199963
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  31199923 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 31199963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 32400874 - 32400846
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  32400874 tggtccctatttttaagtaaatttttgta 32400846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 41044885 - 41044857
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  41044885 tggtccctatttttaagtaaatttttgta 41044857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2618503 - 2618454
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaatcgctccaa 220  Q
    ||||||| |||||||||||| ||| || ||||||||||||||| ||||||    
T  2618503 tttaatgaaattgtgcagaaatatttataatattgtaaaaatccctccaa 2618454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 1631232 - 1631204
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  1631232 tggtccctatttttaagtaaatttttgta 1631204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 7922958 - 7923006
Alignment:
Q  174 aatggaattgtgcagaactatatagaatattgtaaaaatcgctccaaaa 222  Q
    |||| |||||||||||| | |||| ||||||||||||||| ||||||||    
T  7922958 aatgaaattgtgcagaaatgtatataatattgtaaaaatcactccaaaa 7923006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 33463380 - 33463408
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  33463380 tggtccctatttttaagtaaatttttgta 33463408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 37169757 - 37169785
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  37169757 tggtccctatttttaagtaaatttttgta 37169785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 41187378 - 41187418
Alignment:
Q  171 tttaatggaattgtgcagaactatatagaatattgtaaaaa 211  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  41187378 tttaatgaaattgtgcagaaatatgtagaatattgtaaaaa 41187418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 49083423 - 49083451
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  49083423 tggtccctatttttaagtaaatttttgta 49083451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 55379136 - 55379108
Alignment:
Q  129 tggtccctatttttaagtaaatttttgta 157  Q
    |||||||||||||||||||||||||||||    
T  55379136 tggtccctatttttaagtaaatttttgta 55379108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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