View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13997_low_13 (Length: 307)

Name: NF13997_low_13
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13997_low_13
NF13997_low_13
[»] chr7 (12 HSPs)
chr7 (20-307)||(4598254-4598541)
chr7 (21-191)||(19381128-19381299)
chr7 (21-191)||(3135326-3135493)
chr7 (46-188)||(12245880-12246024)
chr7 (22-178)||(15305610-15305765)
chr7 (22-191)||(4072819-4072985)
chr7 (21-178)||(16206211-16206366)
chr7 (47-193)||(14302681-14302829)
chr7 (47-171)||(16370211-16370326)
chr7 (100-139)||(28718282-28718321)
chr7 (97-154)||(17999870-17999928)
chr7 (97-146)||(8250229-8250278)
[»] chr3 (9 HSPs)
chr3 (19-303)||(11822561-11822847)
chr3 (21-187)||(24901722-24901888)
chr3 (21-209)||(7254377-7254568)
chr3 (21-192)||(20418937-20419106)
chr3 (100-171)||(6817480-6817553)
chr3 (95-155)||(19978693-19978754)
chr3 (100-132)||(17760691-17760723)
chr3 (100-132)||(19062011-19062043)
chr3 (100-144)||(30177593-30177637)
[»] scaffold0035 (1 HSPs)
scaffold0035 (21-191)||(64321-64491)
[»] scaffold0183 (1 HSPs)
scaffold0183 (41-187)||(8567-8715)
[»] chr4 (6 HSPs)
chr4 (21-192)||(12336383-12336556)
chr4 (21-143)||(12350536-12350658)
chr4 (68-171)||(14569629-14569731)
chr4 (22-193)||(19082779-19082946)
chr4 (100-192)||(9650099-9650193)
chr4 (100-161)||(12712823-12712886)
[»] scaffold0347 (1 HSPs)
scaffold0347 (27-191)||(3517-3688)
[»] chr8 (6 HSPs)
chr8 (66-191)||(23879177-23879302)
chr8 (48-187)||(18120245-18120386)
chr8 (94-141)||(24237273-24237320)
chr8 (234-307)||(23639494-23639570)
chr8 (100-157)||(24270284-24270342)
chr8 (97-139)||(25608162-25608204)
[»] scaffold0808 (1 HSPs)
scaffold0808 (46-191)||(5533-5680)
[»] scaffold0231 (2 HSPs)
scaffold0231 (23-169)||(15192-15338)
scaffold0231 (95-171)||(15717-15790)
[»] chr6 (8 HSPs)
chr6 (70-169)||(31163167-31163265)
chr6 (19-128)||(9192393-9192501)
chr6 (46-171)||(16374178-16374304)
chr6 (94-193)||(4174544-4174640)
chr6 (100-193)||(4230173-4230263)
chr6 (100-146)||(14487448-14487494)
chr6 (100-156)||(20891735-20891793)
chr6 (114-161)||(12331851-12331899)
[»] chr1 (3 HSPs)
chr1 (45-112)||(17614684-17614751)
chr1 (41-112)||(16243933-16244004)
chr1 (229-307)||(16244124-16244199)
[»] scaffold0112 (1 HSPs)
scaffold0112 (66-171)||(12040-12143)
[»] scaffold0005 (1 HSPs)
scaffold0005 (68-171)||(247645-247747)
[»] chr2 (6 HSPs)
chr2 (68-171)||(45620289-45620391)
chr2 (21-83)||(11348861-11348923)
chr2 (97-178)||(24382016-24382099)
chr2 (46-149)||(23172395-23172499)
chr2 (46-149)||(23583652-23583756)
chr2 (108-157)||(27401960-27402010)
[»] scaffold0613 (1 HSPs)
scaffold0613 (100-157)||(2944-3002)
[»] scaffold1923 (1 HSPs)
scaffold1923 (109-191)||(646-730)
[»] scaffold0014 (1 HSPs)
scaffold0014 (115-161)||(201830-201877)
[»] scaffold0258 (1 HSPs)
scaffold0258 (66-171)||(8480-8586)
[»] scaffold0171 (1 HSPs)
scaffold0171 (97-146)||(2838-2888)
[»] scaffold0123 (1 HSPs)
scaffold0123 (102-142)||(33071-33111)
[»] scaffold0111 (1 HSPs)
scaffold0111 (114-161)||(28582-28630)
[»] scaffold0009 (1 HSPs)
scaffold0009 (66-141)||(256669-256742)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 4598541 - 4598254
Alignment:
Q  20 aactaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4598541 aactaagactccaaaaacagaaaatggaggaagctctcgctatcctcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattc 4598442  T
Q  120 atacaaataggtaggtggtcaaccaaagaccactggggttagcttcacatcatcataattaagcataaacaattggaaaggtttccatcatattgaactt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4598441 atacaaataggtaggtggtcaaccaaagaccactggggttagcttcacatcatcataattaagcataaacaattgaaaaggtttccatcatattgaactt 4598342  T
Q  220 aaattagttaacaaaagagagtccaacttcaatgttattcatcaacgcaaataaattcacaacatcacaagtatgcaattcatcaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4598341 aaattagttaacaaaagagagtccaacttcaatgttattcatcaacgcaaataaattcacaacatcacaagtatgcaattcatcaatc 4598254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 19381128 - 19381299
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||||||||||| |||||||||||||   | |||| |||||||||||||||||||||||||||   |||| |||||| || ||| |||||||    
T  19381128 actaagactccaaaaacagataatggaggaagcttctgttatcctcaagcactcaccaagcaagcaacaaagcaactcctgcacgacgcctacccattca 19381227  T
Q  121 tacaaataggtaggtggtcaacc-aaagaccactggggttagcttcacatcatcataattaagcataaacaa 191  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  19381228 tacaaataggtaggtggtcaaccgaacgaccactagggttagcttcacatcatcataattaagcataaacaa 19381299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 3135326 - 3135493
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    ||||| |||||||||||||| || ||||| ||||| |||||||  |||||||||||||||||||||| |||| || || ||||||||||    |||||||    
T  3135326 actaaaactccaaaaacagataacggaggtagctcccgctatccgcaagcactcaccaagcaagcaa-aaaactattcatgcacgccgt----ccattca 3135420  T
Q  121 tacaaataggtaggtggtcaaccaaa-gaccactggg-gttagcttcacatcatcataattaagcataaacaa 191  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||| | ||||||||||||||| ||||    
T  3135421 tacaaataggtaggcggtcaaccaaacgaccactgggagttagcttcacaacttcataattaagcatagacaa 3135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 12245880 - 12246024
Alignment:
Q  46 gaggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    |||||||||| ||||||| ||||||| ||||||||| ||||||  ||| || ||||||| | |||||| ||||||||||||||||||||| |||  ||||    
T  12245880 gaggaagctcccgctatcctcaagcaactcaccaagaaagcaatcaaactaatcttgcatgtcgtctacccattcatacaaataggtaggcggtacacca 12245979  T
Q  145 aagaccactggggttagcttcacatc-atcataattaagcataaa 188  Q
     ||||||||||||||||||| ||||| |||||||| || ||||||    
T  12245980 cagaccactggggttagcttgacatcaatcataatcaaacataaa 12246024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 15305610 - 15305765
Alignment:
Q  22 ctaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcat 121  Q
    |||||||| || ||||||| || ||||| || || | ||||| ||||||||||||||| ||| ||||||   ||||| ||||||||||||| ||||||||    
T  15305610 ctaagacttcataaacagataacggaggtaggtccctctatcctcaagcactcaccaaacaatcaacaac--tactcctgcacgccgtctacccattcat 15305707  T
Q  122 acaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatcatcataat 178  Q
    ||| ||||||||| |||| |||| |||||||| |||| ||||||||||| ||||||||    
T  15305708 acagataggtaggcggtccaccacagaccactgggggctagcttcacattatcataat 15305765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 4072985 - 4072819
Alignment:
Q  22 ctaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcat 121  Q
    ||||||||||||| || || || |||| |||||| | |||||  ||||||||||||||| || ||||||   ||||| ||||||||||||| ||||||||    
T  4072985 ctaagactccaaagaccgataacggagaaagctcccactatc--caagcactcaccaagaaatcaacaac--tactcctgcacgccgtctacccattcat 4072890  T
Q  122 acaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatc-atcataattaagcataaacaa 191  Q
    ||||| ||||||| |||| |||| |||||||| ||||||||||||||||| |||||||| || |||||||||    
T  4072889 acaaacaggtaggcggtccaccacagaccactaggggttagcttcacatcaatcataatcaa-cataaacaa 4072819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 16206211 - 16206366
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||||||| ||| || | ||| |||||  |||||| ||||||||||||||||||||||||     || || |||| || ||||| |||||||    
T  16206211 actaagactccaaaaaaagataacgaaggtagctcatgctatcctcaagcactcaccaagcaagcaac-----taatcctgcaagctgtctacccattca 16206305  T
Q  121 tacaaataggtaggtggtcaa-ccaaagaccact--ggggttagcttcacatcatcataat 178  Q
    |||||||||| ||| |||||| | || |||||||  |||||||||||||||||||||||||    
T  16206306 tacaaataggcaggcggtcaatcgaacgaccactggggggttagcttcacatcatcataat 16206366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 14302829 - 14302681
Alignment:
Q  47 aggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaa 145  Q
    ||||||||| ||||||||||||||| ||||||||||| || | || |  | || |||| | |||||| ||||||||||||||||||||| |||| ||||     
T  14302829 aggaagctcccgctatcatcaagcaactcaccaagcacgctaaaagatcaatcctgcatgtcgtcta-ccattcatacaaataggtaggcggtccaccac 14302731  T
Q  146 agaccact-ggggttagcttcaca-tcatcataattaagcataaacaatt 193  Q
    |||||||| ||||||| ||||||| | |||||| | ||||||||||||||    
T  14302730 agaccactgggggttaacttcacattaatcatattcaagcataaacaatt 14302681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 16370326 - 16370211
Alignment:
Q  47 aggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa 146  Q
    ||||||||| ||||||| ||||||||||||||| ||| |    ||| ||||| ||||| ||||||| |||| |||||||| ||||||| |||||| |       
T  16370326 aggaagctcccgctatcctcaagcactcaccaaacaaac----aaactactcctgcactccgtctacccatccatacaaacaggtaggcggtcaaac--- 16370234  T
Q  147 gaccactggggttagcttcacatca 171  Q
      |||||||| ||||||||||||||    
T  16370233 --ccactgggattagcttcacatca 16370211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 28718282 - 28718321
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtc 139  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  28718282 tgcacgccgtctacccattcatacaaataggtaggcggtc 28718321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 17999928 - 17999870
Alignment:
Q  97 tcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa-gaccactg 154  Q
    |||| ||||||||||| ||||||||||||||||| ||| | ||||||||| ||||||||    
T  17999928 tcttacacgccgtctacccattcatacaaataggcaggcgatcaaccaaacgaccactg 17999870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 8250229 - 8250278
Alignment:
Q  97 tcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa 146  Q
    ||||||| || ||||| ||||||||||||||||| ||| |||||||||||    
T  8250229 tcttgcaagctgtctacccattcatacaaataggcaggcggtcaaccaaa 8250278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 11822561 - 11822847
Alignment:
Q  19 aaactaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccatt 118  Q
    ||||||| || ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||| |||||||| |||| |||||    
T  11822561 aaactaaaacaccaaaaacagataatggaggaagctcccgctatcctcaagcactcaccaagcaagaaacaaaactactcctgcacgccttctacccatt 11822660  T
Q  119 catacaaataggtaggtggtcaaccaaagaccactg-gggttagcttcacatcatcataattaagcataaacaattggaaaggtttccatcatattgaac 217  Q
    |||||||||||||||| |||||| |||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11822661 catacaaataggtaggcggtcaatcaaagaccatagagggttagcttcacatcatcataattaagcataaacaattgaaaaggtttccatcatattgaac 11822760  T
Q  218 ttaaattagtt-aacaaaagagagtccaacttcaatgttattcatcaacgcaaataaattcacaacatcacaagtatgcaattcatc 303  Q
    || |||||||| ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11822761 ttcaattagttaaacaaaagagaattcaacttcaatgttattcatcaacacaaataaattcacaacatcacaagtatgcaattcatc 11822847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 24901888 - 24901722
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||||||||||| || ||||| ||||| ||||||| |||||||||||||||||||||||| ||| || || |||||| |||||| |||||||    
T  24901888 actaagactccaaaaacagataacggaggtagctcccgctatcctcaagcactcaccaagcaagcaac-aaactattcatgcacgtcgtctacccattca 24901790  T
Q  121 tacaaataggtaggtggtcaacc-aaagaccactggggttagcttcacatcatcataattaagcataa 187  Q
    |||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||    
T  24901789 tacaaataggtaggcggtcaaccgaacgaccactgaggttagcttcacatcatcataatcaagcataa 24901722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 7254377 - 7254568
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||| ||||| ||||| ||| || | ||||||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||| ||  ||||||    
T  7254377 actacgactctaaaaatagataacgaaggaagctcccgctatcatcaagcactcaccaagcaagcaacaaagctactcctacacgacgtttactcattca 7254476  T
Q  121 tacaaataggtaggtggtcaaccaaa-gaccact-ggggttagcttcacatcatcat-aattaagcataaacaattggaaaggtttccatca 209  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| ||| || | |||||||||| ||||||||||||||    
T  7254477 tacaaataggtaggcggtcaaccaaacgaccactgggggttagcttcacataatcataaatcaaacgtaaacaattgaaaaggtttccatca 7254568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 20418937 - 20419106
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||||||||||| || ||||| ||||| ||||||| || ||||||||||||||||| |||||  ||  || || |||||||||| |||||||    
T  20418937 actaagactccaaaaacagataacggaggtagctcccgctatcctcgagcactcaccaagcaagtaacaactat--tcatggacgccgtctacccattca 20419034  T
Q  121 tacaaataggtaggtggtcaaccaaagaccactggggttagcttcacatcatcataattaagcataaacaat 192  Q
    |||||||||||||| |||| |||| |||||||| ||| |||||||||||||||||||| || || |||||||    
T  20419035 tacaaataggtaggcggtccaccacagaccactagggctagcttcacatcatcataatcaaacacaaacaat 20419106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 6817553 - 6817480
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaaga-ccact-ggggttagcttcacatca 171  Q
    ||||||||||||| ||||||||||||| ||||||| |||| | |||||| ||||| ||||| ||||||||||||    
T  6817553 tgcacgccgtctacccattcatacaaacaggtaggcggtccatcaaagatccactaggggtaagcttcacatca 6817480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 19978754 - 19978693
Alignment:
Q  95 actcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa-gaccactgg 155  Q
    ||||||||||| |||||| | ||||||||||||||| ||  ||||||||||| |||||||||    
T  19978754 actcttgcacgtcgtctaccaattcatacaaataggcagacggtcaaccaaacgaccactgg 19978693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 17760723 - 17760691
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggta 132  Q
    ||||||||||||| |||||||||||||||||||    
T  17760723 tgcacgccgtctacccattcatacaaataggta 17760691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 19062043 - 19062011
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggta 132  Q
    ||||||||||||| |||||||||||||||||||    
T  19062043 tgcacgccgtctacccattcatacaaataggta 19062011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 30177637 - 30177593
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  30177637 tgcacaccgtctacccattcatacaaataggcaggcggtcaacca 30177593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 64491 - 64321
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||| |||| |||||| ||| ||| |||| ||||| ||||||| ||||||||||||||||||||||| | |  || || ||||||| ||||| |||||||    
T  64491 actatgacttcaaaaaaagataattgaggtagctcccgctatcctcaagcactcaccaagcaagcaatacac-tattcctgcacgctgtctacccattca 64393  T
Q  121 tacaaataggtaggtggtcaaccaaa-gaccactggggttagcttcacatcatcataattaagcataaacaa 191  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  64392 tacaaataggtaggcggtcaaccaaacgaccactgcggttagcttcacaacatcataatcaagcataaacaa 64321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 8567 - 8715
Alignment:
Q  41 aaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtca 140  Q
    |||| |||||||||| || |||| ||||||| |||||||||||||||||||| || || |||||||||| ||  |||||||||||||||||||| ||||     
T  8567 aaatagaggaagctcccgttatcctcaagcattcaccaagcaagcaacaaaactaatcctgcacgccgtttacacattcatacaaataggtaggcggtcc 8666  T
Q  141 accaaagaccact-ggggttagcttcacatc-atcataattaagcataa 187  Q
    |||| |||||| | ||||||||||||||||| |||||||| || |||||    
T  8667 accacagaccattgggggttagcttcacatcaatcataatcaaacataa 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 12336556 - 12336383
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||||||||| | |  ||||||||||| ||||||| |||||||||||| |||||| |||||||  ||||||| || |  ||||| |||||||    
T  12336556 actaagactccaaaaacatatatcggaggaagctcccgctatcctcaagcactcacaaagcaaacaacaaagctactcttacatgttgtctatccattca 12336457  T
Q  121 tacaaataggtaggtggtcaacc-aaaga-ccactggggttagcttcacatcatcataattaagcataaacaat 192  Q
    |||||||||| ||| |||||||| || || ||  || ||||||||||||||||||||||| || ||||| ||||    
T  12336456 tacaaataggcaggcggtcaaccgaacgaccctatgaggttagcttcacatcatcataataaaacataatcaat 12336383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 12350658 - 12350536
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattca 120  Q
    ||||||||| |||||||||| || ||||||||||| | ||||| |||||||||||||||||||  ||||||  ||||| | |||| |||||| |||||||    
T  12350658 actaagacttcaaaaacagataacggaggaagctcccactatcctcaagcactcaccaagcaaaaaacaaagctactcctacacgacgtctacccattca 12350559  T
Q  121 tacaaataggtaggtggtcaacc 143  Q
    |||||||| | ||| ||||||||    
T  12350558 tacaaatacgcaggcggtcaacc 12350536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 14569629 - 14569731
Alignment:
Q  68 agcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttca 166  Q
    |||||| ||||||||| |||||| ||  ||| ||||||||||||| ||||||||||||||||||||| |||| |||| |||||| | |||||||||||||    
T  14569629 agcacttaccaagcaaccaacaacaa--ctcctgcacgccgtctacccattcatacaaataggtaggcggtccaccacagaccattgggggttagcttca 14569726  T
Q  167 catca 171  Q
    |||||    
T  14569727 catca 14569731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 19082946 - 19082779
Alignment:
Q  22 ctaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcat 121  Q
    ||||||||||||||||  | || ||||  ||||| ||||||| ||||||||||||||||| ||||||  || ||||| ||| || |||||| |  |||||    
T  19082946 ctaagactccaaaaacgaataacggagatagctcccgctatcctcaagcactcaccaagctagcaac--aactactcatgcgcgtcgtctacctgttcat 19082849  T
Q  122 acaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatc-atcataattaagcataaacaatt 193  Q
    ||||||||||||| |||    ||||||||||| || |||||||||||||| |||||||| || |||||||||||    
T  19082848 acaaataggtaggcggt----caaagaccactcggagttagcttcacatcaatcataatcaaacataaacaatt 19082779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 9650099 - 9650193
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatc-atcataattaagcataaacaat 192  Q
    ||||||| |||||  |||||||||||||| ||||| |||| |||| |||||| | ||||||||||| ||||| |||||||| || ||||||||||    
T  9650099 tgcacgctgtctattcattcatacaaatatgtaggcggtccaccacagaccattgggggttagcttgacatcaatcataatcaaacataaacaat 9650193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 12712823 - 12712886
Alignment:
Q  100 tgcacgccgtcta-gccattcatacaaataggtaggtggtcaaccaaa-gaccactggggttag 161  Q
    ||||||||||||| ||||||||||||||| | |||| ||||||||||| ||| |||||||||||    
T  12712823 tgcacgccgtctatgccattcatacaaatggataggcggtcaaccaaacgactactggggttag 12712886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 3517 - 3688
Alignment:
Q  27 actccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaa------aaatactcttgcacgccgtctagccattca 120  Q
    |||||||||||| | || ||||| ||||  ||||||| ||||| ||||||||||||||||||||      || || |  ||||||||||||| |||||||    
T  3517 actccaaaaacatataacggaggtagcttccgctatcctcaagaactcaccaagcaagcaacaagcaacaaactatttctgcacgccgtctacccattca 3616  T
Q  121 tacaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatcatcataattaagcataaacaa 191  Q
    ||||||||| |||| |||| |||| | |||||| ||||||||||||||||||||||||| ||||||| ||||    
T  3617 tacaaatagttaggcggtccaccacataccactaggggttagcttcacatcatcataatcaagcatagacaa 3688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 23879177 - 23879302
Alignment:
Q  66 caagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagctt 164  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||| ||||||||||||||||||||| |||| |||| | |||||| |||||||||||    
T  23879177 caagcactcaccaagcaagcaacaaac-taatcttgcacaccgtctacccattcatacaaataggtaggcggtccaccacaaaccactaggggttagctt 23879275  T
Q  165 cacatc-atcataattaagcataaacaa 191  Q
    |||||| |||||||| || |||||||||    
T  23879276 cacatcaatcataatcaa-cataaacaa 23879302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 18120386 - 18120245
Alignment:
Q  48 ggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaag 147  Q
    |||||||| ||||||| | |||||| || |||||||||||||||| ||  | |||| | |||||| ||||||||||||||||||||| |||| |||| ||    
T  18120386 ggaagctcccgctatccttaagcacacatcaagcaagcaacaaaactaaacctgcatgtcgtctaaccattcatacaaataggtaggcggtccaccacag 18120287  T
Q  148 accact-ggggttagcttcacatc-atcataattaagcataa 187  Q
    |||||| ||||||||||||||||| |||||||| ||| ||||    
T  18120286 accactgggggttagcttcacatcaatcataatcaagaataa 18120245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 24237273 - 24237320
Alignment:
Q  94 tactcttgcacgccgtctagccattcatacaaataggtaggtggtcaa 141  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||||||    
T  24237273 tactcctgcactccgtctacccattcatacaaacaggtaggtggtcaa 24237320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 23639570 - 23639494
Alignment:
Q  234 aagagagtccaacttcaatgttattcatcaacgcaaataaattcaca---acatcacaagtatgcaattcatcaatc 307  Q
    |||||| | |||||||||  |||||||||||| |||| |||||||||   |||||||||| || |||||||||||||    
T  23639570 aagagaattcaacttcaacattattcatcaacacaaacaaattcacaactacatcacaagaattcaattcatcaatc 23639494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 24270284 - 24270342
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa-gaccactgggg 157  Q
    ||||| ||||||| |||||| |||||||||| ||| ||||||||||| |||||||||||    
T  24270284 tgcacaccgtctaaccattcgtacaaataggcaggcggtcaaccaaacgaccactgggg 24270342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 25608162 - 25608204
Alignment:
Q  97 tcttgcacgccgtctagccattcatacaaataggtaggtggtc 139  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||    
T  25608162 tcttgcacgccgtctacccattcatacaaacaggtaggcggtc 25608204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 5533 - 5680
Alignment:
Q  46 gaggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    ||||||||||  |||||| ||||||| ||||||||||||||||  ||| || || ||||||||||||| ||||||||||||||||||||| |||| ||||    
T  5533 gaggaagctcctgctatcctcaagcaactcaccaagcaagcaaacaaactaatcatgcacgccgtctacccattcatacaaataggtaggcggtccacca 5632  T
Q  145 aagaccact-ggggttagcttcacatc-atcataattaagcataaacaa 191  Q
     | |||||| ||||||| ||||||||| |||||||| || |||||||||    
T  5633 tacaccactgggggttaacttcacatcaatcataatcaa-cataaacaa 5680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 15338 - 15192
Alignment:
Q  23 taagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcata 122  Q
    |||||||||||||||||| |   |||| || ||| |||||| |||||||||||||||||| ||||||||| || || ||||| | ||||  |||||||||    
T  15338 taagactccaaaaacagatagatgaggtagttct-gctatcttcaagcactcaccaagcatgcaacaaaactaatcatgcacactgtcttcccattcata 15240  T
Q  123 caaataggtaggtggtcaaccaaagaccact-ggggttagcttcacat 169  Q
     ||||||||||| |||| | || |||||||| ||||||||||||||||    
T  15239 taaataggtaggcggtccatcacagaccactgggggttagcttcacat 15192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 15790 - 15717
Alignment:
Q  95 actcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatca 171  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||    ||||||||| | ||||||||||||||||||    
T  15790 actcctgcacgccgtctacccattcatacaaacaggtaggtggt----caaagaccattgggggttagcttcacatca 15717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 31163265 - 31163167
Alignment:
Q  70 cactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccactggggttagcttcacat 169  Q
    |||||||||||||||||| |||  || |||||||||  ||||| ||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||    
T  31163265 cactcaccaagcaagcaataaac-tattcttgcacgttgtctacccattcatacaaataggtaggcggtccaccatagaccactgggattagcttcacat 31163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 9192393 - 9192501
Alignment:
Q  19 aaactaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccatt 118  Q
    ||||||||||||||||| | || || ||||||| ||| ||||||   ||||||||||||||||||| ||||||| ||||| |||||| |||||| |||||    
T  9192393 aaactaagactccaaaa-cggataacggaggaacctcccgctattcgcaagcactcaccaagcaaggaacaaaactactcatgcacgtcgtctacccatt 9192491  T
Q  119 catacaaata 128  Q
    ||||||||||    
T  9192492 catacaaata 9192501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 16374178 - 16374304
Alignment:
Q  46 gaggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    |||||||||| ||||||| ||||||| ||||||||||| || | || |  | || |||| ||| |||| ||||||||| ||||||||||| |||| |||     
T  16374178 gaggaagctcccgctatcctcaagcaactcaccaagcacgctaaaagatcaatcctgcatgccatctacccattcatataaataggtaggcggtccaccg 16374277  T
Q  145 aagaccactggggttagcttcacatca 171  Q
     | ||||||||||||||||||||||||    
T  16374278 cataccactggggttagcttcacatca 16374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 4174640 - 4174544
Alignment:
Q  94 tactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatc-atcataattaagcataaacaa 191  Q
    ||||| ||||||||||||| |||| |||||||| ||||||| |||    ||||||||||| ||||||||||||||||| |||||||| || |||||||||    
T  4174640 tactcctgcacgccgtctacccatccatacaaacaggtaggcggt----caaagaccactgggggttagcttcacatcaatcataatcaa-cataaacaa 4174546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 4230263 - 4230173
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttcacatc-atcataattaagcataaacaatt 193  Q
    ||||||||||||| |||| |||||||| ||||||| |||    ||||||||||| ||||||||||||||||| |||||||| || |||||||||||    
T  4230263 tgcacgccgtctacccatccatacaaacaggtaggcggt----caaagaccactgggggttagcttcacatcaatcataatcaa-cataaacaatt 4230173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 14487494 - 14487448
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa 146  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  14487494 tgcacgccgtctacccattcatacaaataggtaggcggttaaccaaa 14487448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 20891735 - 20891793
Alignment:
Q  100 tgcacgccgtctag-ccattcatacaaataggtaggtggtcaaccaaa-gaccactggg 156  Q
    |||||||||||||  |||||||||||||| |||||| ||||||||||| ||||||||||    
T  20891735 tgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgaccactggg 20891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 12331899 - 12331851
Alignment:
Q  114 ccattcatacaaataggtaggtggtcaaccaaa-gaccactggggttag 161  Q
    |||||||||||||| |||||| ||||||| ||| |||||||||||||||    
T  12331899 ccattcatacaaatgggtaggcggtcaactaaacgaccactggggttag 12331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 17614751 - 17614684
Alignment:
Q  45 ggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtcta 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  17614751 ggaggaagctcccgctatcatcaagcactcaccaagcaagcaacaaagctactcctgcacgccgtcta 17614684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 16243933 - 16244004
Alignment:
Q  41 aaatggaggaagctctcgctatcatcaagcactcaccaagcaagcaacaaaaatactcttgcacgccgtcta 112  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||| ||| ||| ||||||    
T  16243933 aaatagaggaagctcccgctatcctcaagcactcaccaagcaagcaacaaagctacttttggacgtcgtcta 16244004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 16244124 - 16244199
Alignment:
Q  229 aacaaaagagagtccaacttcaatgttattcatcaacgcaaataaattcacaacatcacaagtatgcaattcatcaatc 307  Q
    ||||||||| | | |||||||||  |||||||||||| || |||||||||||   ||||||||||||||||||||||||    
T  16244124 aacaaaagataattcaacttcaacattattcatcaacacatataaattcaca---tcacaagtatgcaattcatcaatc 16244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 12040 - 12143
Alignment:
Q  66 caagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccactggggttagcttc 165  Q
    |||||||||||||||||| ||||||   ||||| |||||||||||||  |||||||||||||||||| | ||||||||| |  ||| |||||||||||||    
T  12040 caagcactcaccaagcaatcaacaac--tactcctgcacgccgtctaaacattcatacaaataggtatgcggtcaaccacaagccaatggggttagcttc 12137  T
Q  166 acatca 171  Q
    ||||||    
T  12138 acatca 12143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 247747 - 247645
Alignment:
Q  68 agcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagcttca 166  Q
    |||||| ||||||||| |||||| ||  ||| ||||||||||||| ||||||||||||||||||||| |||| |||| |||||| | |||||||||||||    
T  247747 agcacttaccaagcaaccaacaacaa--ctcctgcacgccgtctacccattcatacaaataggtaggcggtccaccacagaccattgggggttagcttca 247650  T
Q  167 catca 171  Q
    |||||    
T  247649 catca 247645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 45620391 - 45620289
Alignment:
Q  68 agcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccactg-gggttagcttca 166  Q
    ||||||| |||||||| ||||||   ||||| ||||| ||||||| ||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||    
T  45620391 agcactccccaagcaatcaacaac--tactcctgcacaccgtctacccattcatacaaataggtaggcggtccaccacagaccactgagggttagcttca 45620294  T
Q  167 catca 171  Q
    |||||    
T  45620293 catca 45620289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 11348923 - 11348861
Alignment:
Q  21 actaagactccaaaaacagaaaatggaggaagctctcgctatcatcaagcactcaccaagcaa 83  Q
    |||||||||||||||||||| || ||||| ||||| ||||||| |||||||| ||||||||||    
T  11348923 actaagactccaaaaacagataacggaggtagctcccgctatcctcaagcacacaccaagcaa 11348861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 24382016 - 24382099
Alignment:
Q  97 tcttgcacgccgtctagccattcatacaaataggtaggtggtcaacc-aaagaccactg-gggttagcttcacatcatcataat 178  Q
    |||||||||| ||||| ||||||||||||||||| ||  || ||||| || | |||||| ||||||||||||||||||||||||    
T  24382016 tcttgcacgctgtctacccattcatacaaataggcagacggccaaccgaacggccactgagggttagcttcacatcatcataat 24382099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 23172499 - 23172395
Alignment:
Q  46 gaggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    |||||||||| ||||||| ||||||| |||||||  ||||| | || |  | || ||||| ||||||| ||||||||||||||| ||||| |||||||||    
T  23172499 gaggaagctcccgctatcctcaagcaactcaccacacaagctaaaagatcagtcatgcacaccgtctacccattcatacaaataagtaggcggtcaacca 23172400  T
Q  145 aagac 149  Q
     ||||    
T  23172399 cagac 23172395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 23583756 - 23583652
Alignment:
Q  46 gaggaagctctcgctatcatcaagca-ctcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaacca 144  Q
    |||||||||| ||||||| ||||||| |||||||  ||||| | || |  | || ||||| ||||||| ||||||||||||||| ||||| |||||||||    
T  23583756 gaggaagctcccgctatcctcaagcaactcaccacacaagctaaaagatcagtcatgcacaccgtctacccattcatacaaataagtaggcggtcaacca 23583657  T
Q  145 aagac 149  Q
     ||||    
T  23583656 cagac 23583652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27401960 - 27402010
Alignment:
Q  108 gtctagccattcatacaaataggtaggtggtcaaccaaa-gaccactgggg 157  Q
    ||||| ||||||||||||||||| ||| ||||||||||| |||||||||||    
T  27401960 gtctacccattcatacaaataggcaggcggtcaaccaaacgaccactgggg 27402010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 3002 - 2944
Alignment:
Q  100 tgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaa-gaccactgggg 157  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  3002 tgcatgccgtctacccattcatacaaataggtaggcggtcaaccaaatgaccactgggg 2944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1923 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 646 - 730
Alignment:
Q  109 tctagccattcatacaaataggtaggtggtcaaccaaagaccactg-gggttagcttcacatc-atcataattaagcataaacaa 191  Q
    |||| ||||||||||||||||||||| |||| |||| ||||||||| |||||| ||||||||| |||||||| ||  ||||||||    
T  646 tctacccattcatacaaataggtaggcggtccaccacagaccactgagggttatcttcacatcaatcataatcaaatataaacaa 730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 201830 - 201877
Alignment:
Q  115 cattcatacaaataggtaggtggtcaaccaaa-gaccactggggttag 161  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  201830 cattcatacaaataggcaggtggtcaaccaaacgaccactggggttag 201877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 8480 - 8586
Alignment:
Q  66 caagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaaccaaagaccact-ggggttagctt 164  Q
    |||||||||||||||||||| | ||||  | || | ||||||||||| |||||| |||||||||||||  |||| |||| | ||| || |||||||||||    
T  8480 caagcactcaccaagcaagctataaaaccaatccttcacgccgtctacccattcgtacaaataggtagtcggtccaccacaaacccctgggggttagctt 8579  T
Q  165 cacatca 171  Q
     ||||||    
T  8580 gacatca 8586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 2838 - 2888
Alignment:
Q  97 tcttgcacgccgtctag-ccattcatacaaataggtaggtggtcaaccaaa 146  Q
    ||||||||||||| ||  |||||||||||||| ||||||||||||||||||    
T  2838 tcttgcacgccgtatataccattcatacaaatgggtaggtggtcaaccaaa 2888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 33071 - 33111
Alignment:
Q  102 cacgccgtctagccattcatacaaataggtaggtggtcaac 142  Q
    ||||||||||| ||||||||||||||||| ||| |||||||    
T  33071 cacgccgtctacccattcatacaaataggcaggcggtcaac 33111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 28582 - 28630
Alignment:
Q  114 ccattcatacaaataggtaggtggtcaaccaaa-gaccactggggttag 161  Q
    ||||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  28582 ccattcatacaaataggcaggcgatcaaccaaacgaccactggggttag 28630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 256742 - 256669
Alignment:
Q  66 caagcactcaccaagcaagcaacaaaaatactcttgcacgccgtctagccattcatacaaataggtaggtggtcaa 141  Q
    ||||||||||| |||||| ||||||   ||||| ||||||||||||| ||||| || |||| ||||||| ||||||    
T  256742 caagcactcacgaagcaatcaacaac--tactcatgcacgccgtctacccattaatccaaacaggtaggcggtcaa 256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University