View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13997_low_16 (Length: 253)
Name: NF13997_low_16
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13997_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 18719063 - 18718831
Alignment:
| Q |
17 |
actagaaacccggctggatcgtaacatctgagagttctgaagcttagatatcttgattgtgcaagcatat--ggattgtgtcacatgaaaagttagaagt |
114 |
Q |
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| T |
18719063 |
actagaaacccgcctggattgtaacatctgagagttctgaagcttagatatcttgattgtgcaagcatatatggattgtgtcacatgaaaagttagaagt |
18718964 |
T |
|
| Q |
115 |
aaccacaaaagatcttagtatattaatgaaattgatggtgtgaacaactttaaactattgagtagctttctccaaaaatggttcagcaagcttaacaaca |
214 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18718963 |
aaccataaaagatcttagtatatcaatgaaattgatggtgtgaacaactttaaaccattgagtagctttctccaaaaagggttcagcaagcttaacaaca |
18718864 |
T |
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| Q |
215 |
ccagaagaatcaacaagcaagttagcccctttg |
247 |
Q |
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| T |
18718863 |
ccagaagaatcaacaagcaagttagcccctttg |
18718831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 32380679 - 32380787
Alignment:
| Q |
96 |
cacatgaaaagttagaagtaaccacaaaagatcttagtatattaatgaaattgatggtgtgaacaactttaaactattgagtagctttctccaaaaatgg |
195 |
Q |
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||||||||||| | |||||||| ||||||||||||||| || |||| ||||||||| ||||||||||| |||| ||||| ||||||||||||||||| | |
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| T |
32380679 |
cacatgaaaagctggaagtaacagcaaaagatcttagtacatcaatgcaattgatggcgtgaacaacttcaaaccattgattagctttctccaaaaatag |
32380778 |
T |
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| Q |
196 |
ttcagcaag |
204 |
Q |
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||||||||| |
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| T |
32380779 |
ttcagcaag |
32380787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 6624926 - 6624976
Alignment:
| Q |
197 |
tcagcaagcttaacaacaccagaagaatcaacaagcaagttagcccctttg |
247 |
Q |
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| T |
6624926 |
tcagcaagcttaacaacaccagaagaatcaacaagcaagttagcccctttg |
6624976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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