View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13997_low_2 (Length: 939)
Name: NF13997_low_2
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13997_low_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 832; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 12 - 939
Target Start/End: Original strand, 6283845 - 6284772
Alignment:
| Q |
12 |
gagcagagaaggataggtttttccaataacacctccattgattatagatagaggaagggggtactatagttccagaaacacctggaggaaatgtggaggg |
111 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
6283845 |
gagcagagaaggataggtttttccaataacaccgccattaattatagatagaggaagggggtacgatagttctggaaacacctggaggaaatgtggaggg |
6283944 |
T |
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| Q |
112 |
agagtatgtaggaaatagttggatgcggtagggatttttcgttgacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
211 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6283945 |
agagtaggtaggaaatagttggatgcagtagggatttttcgcttacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
6284044 |
T |
|
| Q |
212 |
cggtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttgggg |
311 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||| |
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| T |
6284045 |
cggtagaacttgaagaagttgatgagttgaataaaggaagaaaggagaaagcaagcagtggtcaatgattgtattgatttataatgtgagaagcttgggg |
6284144 |
T |
|
| Q |
312 |
aagatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggttgatatctttcgcgtgggaggggtttttcggggtgtgcttggtgtgaggatt |
411 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
6284145 |
aagatcgaaaaggaaaatgattaactagttggtgcgccaacaaaaggttgatatctttcgcgtgggagggttttgtcggggtgtgcttggagtgaggatt |
6284244 |
T |
|
| Q |
412 |
cctttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatcttttcatggttacagatactttga |
511 |
Q |
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| T |
6284245 |
cttttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatcttttgatggttacagatactttga |
6284344 |
T |
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| Q |
512 |
gagaaggagcttggtgttcggtgggtgattttaatgcgtgtgtagtttgaaagagagaagggggataaattttgaagcttcttcgggacaactattgaaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6284345 |
gagaaggagcttggtgttcggtgggtgattttaatgcgtgtgtagtttgaaagagagaagggggataaattttgaagcttcttcgggacaaccattgaaa |
6284444 |
T |
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| Q |
612 |
atgaattctttttaataatttcttgagggaggtggacatgctggatgtgaccgctactggtcgtagatttacttggtataattcaaatgggagtgcgatg |
711 |
Q |
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| T |
6284445 |
atgaactctttttaataatttcttgagggaggtggacatgctggatgtgaccgctactggtcgtagatttacttggtataattcaaatgggagtgcgatg |
6284544 |
T |
|
| Q |
712 |
agtcatattgatagagctctaattatcaagaaaaaatggtctaacaattagggttatgtggcttggtgggtcttatcgagggatatatcagatcattacc |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6284545 |
agtcatattgatagagctctaattatcaagaaaaaatggtctaacaattagggttatgtggcttggtgggtcttatcgagggatatatcagatcattacc |
6284644 |
T |
|
| Q |
812 |
tcttggtttttaaagttggagataggggttggggtccaaacccattttgcttcaataatttttggctggaagacatgaagtttaaacaagtagtggagga |
911 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6284645 |
tcttggtttttaaagttggagataggggttggggtccaaacccattttgcttcaataatttttggctggaagacatgaagtttaaacaagtagtggagga |
6284744 |
T |
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| Q |
912 |
tgtacaagaaaatcaaaatgttaggttt |
939 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
6284745 |
tgtacaagaaaatcaaaatgttaggttt |
6284772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 437 - 749
Target Start/End: Original strand, 6305775 - 6306077
Alignment:
| Q |
437 |
atatctattccaaatatgatataattgcaaagaggagattctgtgagaatcttttcatggttacagatactttgagagaaggagcttggtgttcggtggg |
536 |
Q |
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|||| ||||| |||| ||||||||| ||||||| ||| || || | ||||||||| ||||||| | |||||||| ||||||||| ||||||||| ||| |
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| T |
6305775 |
atatatattctaaatgtgatataatggcaaagacgaggttgtgcgggaatcttttgatggttagaaatactttgtgagaaggagaatggtgttcgatgga |
6305874 |
T |
|
| Q |
537 |
tgattttaatgcgtgtgtagtttg-aaagagagaagggggataaattttgaagcttcttcgggacaactattgaaaatgaattctttttaataatttctt |
635 |
Q |
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| T |
6305875 |
tgattt-aatacgcgtgtagttcggaaagggggaaggggaataaatttggaagcttctttgggacaacagttagaaatgaata-ttttcaataa------ |
6305966 |
T |
|
| Q |
636 |
gagggaggtggacatgctggatgtgaccgctactggtcgtagatttacttggtataattcaaatgggagtgcgatgagtcatattgatagagctctaatt |
735 |
Q |
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| T |
6305967 |
--gggaggtggacttggtggatgtgacccctctagatcgtagatttacttggtataatttaaatgggagtgcgatgagtcatattgataaaggtcaaatt |
6306064 |
T |
|
| Q |
736 |
atcaagaaaaaatg |
749 |
Q |
| |
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| T |
6306065 |
a-aaagaaaaaatg |
6306077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 6305577 - 6305719
Alignment:
| Q |
214 |
gtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttggggaa |
313 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||| | | |
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| T |
6305577 |
gtagaacatgaagaagcagatgtgttgaataaaggaagaagggagaaagcaactagtgatcaatgattgtgttgatttataa--tgagaggcttggag-a |
6305673 |
T |
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| Q |
314 |
gatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggt |
359 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
6305674 |
gatcgaaaaggaaaatgattaactagttggtgcgccaaaaaaaggt |
6305719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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