View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13997_low_3 (Length: 592)

Name: NF13997_low_3
Description: NF13997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13997_low_3
NF13997_low_3
[»] chr4 (7 HSPs)
chr4 (17-452)||(32000813-32001248)
chr4 (17-452)||(31941854-31942289)
chr4 (257-452)||(32003917-32004112)
chr4 (497-592)||(31942334-31942429)
chr4 (497-592)||(32001293-32001388)
chr4 (505-585)||(32004137-32004220)
chr4 (89-158)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (91-158)||(2950124-2950191)
chr7 (242-290)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (55-183)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (89-144)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (89-126)||(20732617-20732654)
chr3 (89-126)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (92-128)||(9622097-9622133)
chr8 (92-122)||(7195709-7195739)
chr8 (89-134)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (82-121)||(27632581-27632620)
chr1 (70-125)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (241-299)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 32000813 - 32001248
Alignment:
Q  17 gatttgagttatgttttagttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaacta 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000813 gatttgagttatgtttttgttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaacta 32000912  T
Q  117 ctggaacacacacctcaagaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000913 ctggaacacacacctcaagaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcag 32001012  T
Q  217 tacaccaaagactcagctaacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001013 tacaccaaagactcagctaacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaag 32001112  T
Q  317 ttcaaagacaacttgagtttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001113 ttcaaagacaacttgagtttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttg 32001212  T
Q  417 tcttgatattctcaaagcatggcaaagttcatggtc 452  Q
    ||||||||||||||||||||||||||||||||||||    
T  32001213 tcttgatattctcaaagcatggcaaagttcatggtc 32001248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 31941854 - 31942289
Alignment:
Q  17 gatttgagttatgttttagttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaacta 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31941854 gatttgagttatgtttttgttatgattgattatgtgcacacagatggtcagcaatagcagctcaacttccaagaagaacagacaatgaaatcaagaacta 31941953  T
Q  117 ctggaacacacacctcaagaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941954 ctggaacacacacctcaagaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcag 31942053  T
Q  217 tacaccaaagactcagctaacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942054 tacaccaaagactcagctaacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaag 31942153  T
Q  317 ttcaaagacaacttgagtttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942154 ttcaaagacaacttgagtttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttg 31942253  T
Q  417 tcttgatattctcaaagcatggcaaagttcatggtc 452  Q
    ||||||||||||||||||||||||||||||||||||    
T  31942254 tcttgatattctcaaagcatggcaaagttcatggtc 31942289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 257 - 452
Target Start/End: Original strand, 32003917 - 32004112
Alignment:
Q  257 gggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcc 356  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| | |||||||||||||||||||| |     
T  32003917 gggaaagtgctcgtttggaagcaaaagcaagacttgttagagaaactaacaaaataaaagttcaaagacaactttaatttgaatcctccaaaccacaaca 32004016  T
Q  357 acctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 452  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||    
T  32004017 acctgcaagacttttcctcaacaaaatcacaccactcattcaaccttcacttcccctttctcttgatattctaaaagcatggtaaagttcatggtc 32004112  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 497 - 592
Target Start/End: Original strand, 31942334 - 31942429
Alignment:
Q  497 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942334 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 31942429  T

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Target: chr4; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 497 - 592
Target Start/End: Original strand, 32001293 - 32001388
Alignment:
Q  497 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001293 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 32001388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 32004137 - 32004220
Alignment:
Q  505 atgtatgctatgatgttatccaatgatga---tcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcct 585  Q
    ||||||| |||||||| ||||||||||||   |||||||||||| ||||||||||||||||| || ||||||||| ||||||||    
T  32004137 atgtatgttatgatgtcatccaatgatgaaaatcttgaatctcctacatccactttgaacttcccgggaacaaccctgcttcct 32004220  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 36246545 - 36246614
Alignment:
Q  89 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 158  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  36246545 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 36246614  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 2950124 - 2950191
Alignment:
Q  91 agaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 158  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||| | |||||||||    
T  2950124 agaacagataatgaaatcaagaactattggaacacacatcttaagaaaagattaaccaaaatgggaat 2950191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 28944780 - 28944732
Alignment:
Q  242 gtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagact 290  Q
    |||||||||||||||||||||||||  |  | |||||||||||||||||    
T  28944780 gtcacatggctcaatgggagagtgcaaggcttgaagcagaagcaagact 28944732  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 18478948 - 18479076
Alignment:
Q  55 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 154  Q
    |||||||||||  |||||||||| |  || ||||| |||||||| |||||||| |||||  | |||||||   || ||||||||||||| |  |||||||    
T  18478948 cacagatggtccacaatagcagctctcctgccaaggagaacagataatgaaataaagaatcattggaacattaacatcaagaaaagactcatcagaatgg 18479047  T
Q  155 gaatagacccaacaactcacaaaccaaaa 183  Q
    | ||||| || || |||||||||||||||    
T  18479048 ggatagatcccaccactcacaaaccaaaa 18479076  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 37881361 - 37881306
Alignment:
Q  89 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 144  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  37881361 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 20732654 - 20732617
Alignment:
Q  89 gaagaacagacaatgaaatcaagaactactggaacaca 126  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20732654 gaagaacagacaatgaaataaagaactactggaacaca 20732617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 20740390 - 20740353
Alignment:
Q  89 gaagaacagacaatgaaatcaagaactactggaacaca 126  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20740390 gaagaacagacaatgaaataaagaactactggaacaca 20740353  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 9622097 - 9622133
Alignment:
Q  92 gaacagacaatgaaatcaagaactactggaacacaca 128  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9622097 gaacagacaatgaaataaagaactactggaacacaca 9622133  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 122
Target Start/End: Original strand, 7195709 - 7195739
Alignment:
Q  92 gaacagacaatgaaatcaagaactactggaa 122  Q
    |||||||||||||||||||||||||||||||    
T  7195709 gaacagacaatgaaatcaagaactactggaa 7195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 39916910 - 39916955
Alignment:
Q  89 gaagaacagacaatgaaatcaagaactactggaacacacacctcaa 134  Q
    |||||||||||||||| ||||||||||| |||||||| ||| ||||    
T  39916910 gaagaacagacaatgagatcaagaactattggaacactcacatcaa 39916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 27632620 - 27632581
Alignment:
Q  82 cttccaagaagaacagacaatgaaatcaagaactactgga 121  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  27632620 cttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 45594341 - 45594286
Alignment:
Q  70 atagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacac 125  Q
    |||||||| ||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  45594341 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 3912013 - 3912071
Alignment:
Q  241 agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga 299  Q
    |||||||||||||||||||| |||||| |  | ||||| ||||| ||||||||||||||    
T  3912013 agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga 3912071  T

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