View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_high_13 (Length: 382)

Name: NF13998_high_13
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_high_13
NF13998_high_13
[»] chr4 (2 HSPs)
chr4 (1-374)||(50289613-50289986)
chr4 (124-199)||(2097082-2097157)
[»] chr7 (1 HSPs)
chr7 (11-58)||(39115792-39115839)
[»] chr1 (2 HSPs)
chr1 (142-199)||(32423554-32423611)
chr1 (149-197)||(36472638-36472686)
[»] scaffold0340 (1 HSPs)
scaffold0340 (11-58)||(5669-5716)
[»] chr5 (1 HSPs)
chr5 (119-197)||(29814951-29815029)
[»] chr3 (1 HSPs)
chr3 (143-197)||(46578137-46578191)
[»] chr8 (1 HSPs)
chr8 (142-199)||(12136512-12136569)
[»] chr2 (1 HSPs)
chr2 (129-189)||(1652538-1652598)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 50289613 - 50289986
Alignment:
Q  1 tgaaataaccgtattcttcattgttacctttgtagcagactttcattttgaactgtcaacggttttagtgtatgttgcatctattttgttattaaagttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50289613 tgaaataaccgtattcttcattgttacctttgtagcagactttcattttgaactgtcaacggttttagtgtatgttgcatttattttgttattaaagttg 50289712  T
Q  101 gtcaattttgaataatattaaggggtttggtagcttaagtagtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggagtat 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50289713 gtcaattttgaataatattaaggggtttggtagcttaagtggtttgaactaaggcaaaagaagttggaggtcctaggttcaaacccggacaaaggagtat 50289812  T
Q  201 tctattaataaattaactatgaacatttgcaattcaaaaacaaaagaaagttttgaacaatattatgcttcacatttgtcgttcccatctgtctgcggtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50289813 tctattaataaattaactatgaacatttgcaattcaaaaacaaaagaaagttttgaacaatattatgcttcacatttgtcgttcccatctgtctgcggtc 50289912  T
Q  301 tatgggctctcactactggtgtttannnnnnnnattgattgtattatagtgtttttaatcagtagctgatgatg 374  Q
    |||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||||    
T  50289913 tatgggctctcactactggtgtttattttttttaatgattgtattatagtgtttttaatcagtagctgatgatg 50289986  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 2097082 - 2097157
Alignment:
Q  124 ggtttggtagcttaagtagtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggagta 199  Q
    |||| ||||||| || |||||||| ||||||   ||| ||||||||||||| |||||||| |||||||| ||||||    
T  2097082 ggttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagta 2097157  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 39115792 - 39115839
Alignment:
Q  11 gtattcttcattgttacctttgtagcagactttcattttgaactgtca 58  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  39115792 gtatttttcatagttacctttgtagtagactttcattttgaactgtca 39115839  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 32423611 - 32423554
Alignment:
Q  142 gtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggagta 199  Q
    ||||||||||||| | |||||||||||| || | |||||||| |||||||||||||||    
T  32423611 gtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagta 32423554  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 36472686 - 36472638
Alignment:
Q  149 ctaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggag 197  Q
    |||||| | ||| ||||||||||||| |||||||| |||||||||||||    
T  36472686 ctaagggataaggagttggaggtcctgggttcaaacccggacaaaggag 36472638  T

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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 5669 - 5716
Alignment:
Q  11 gtattcttcattgttacctttgtagcagactttcattttgaactgtca 58  Q
    ||||| ||||| ||||||||| ||| ||||||||||||||||||||||    
T  5669 gtatttttcatagttacctttatagtagactttcattttgaactgtca 5716  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 29815029 - 29814951
Alignment:
Q  119 taaggggtttggtagcttaagtagtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggag 197  Q
    |||| |||| ||||||| || | |||||| |||||| | ||| |||||||||||||||||||||| | | |||||||||    
T  29815029 taagtggttgggtagctcaattggtttgagctaagggataaggagttggaggtcctaggttcaaacctgaacaaaggag 29814951  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 46578191 - 46578137
Alignment:
Q  143 tttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggag 197  Q
    |||||||||||| | ||||||||||| ||||| |||||||| | |||||||||||    
T  46578191 tttgaactaaggaataagaagttggaagtccttggttcaaacctggacaaaggag 46578137  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 12136512 - 12136569
Alignment:
Q  142 gtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccggacaaaggagta 199  Q
    |||||| |||||| | |||||||||||||| || ||||||||  ||||||||||||||    
T  12136512 gtttgagctaaggaataagaagttggaggtactgggttcaaagtcggacaaaggagta 12136569  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 1652538 - 1652598
Alignment:
Q  129 ggtagcttaagtagtttgaactaaggcaaaagaagttggaggtcctaggttcaaatccgga 189  Q
    ||||||| || | |||||| |||||| | ||||| |||||||||||||||||||| |||||    
T  1652538 ggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccgga 1652598  T

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