View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_high_14 (Length: 373)
Name: NF13998_high_14
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 239134 - 239341
Alignment:
| Q |
17 |
acattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcat |
116 |
Q |
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| T |
239134 |
acattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcat |
239233 |
T |
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| Q |
117 |
tgctcaaaaaagatgcttttctcctcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatatatgcaccaaggga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
239234 |
tgctcaaaaaagatgcttttctcctcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatctatgcaccaaggga |
239333 |
T |
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| Q |
217 |
tgcaaggg |
224 |
Q |
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|||||||| |
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| T |
239334 |
tgcaaggg |
239341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 225117 - 225324
Alignment:
| Q |
17 |
acattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcat |
116 |
Q |
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||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| || | ||||| |||||||| |||||||| ||||||| |
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| T |
225117 |
acattttaccggatctacaagaaaaaatcaacagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgcat |
225216 |
T |
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| Q |
117 |
tgctcaaaaaagatgcttttctcctcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatatatgc-accaaggg |
215 |
Q |
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| T |
225217 |
tcctcaaaaaagatgaatttctccttattaccattaactcttttgggtgcgtcgtagagctcatttacatcatcttgtacataatctatgcgaccaa-gg |
225315 |
T |
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| Q |
216 |
atgcaaggg |
224 |
Q |
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| T |
225316 |
atgcaaggg |
225324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 239432 - 239484
Alignment:
| Q |
314 |
gtagaacttaactttcaagttactttcggcaatgaatgtggggtcctttgctt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239432 |
gtagaacttaactttcaagttactttcggcaatgaatgtggggtcctttgctt |
239484 |
T |
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