View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_high_16 (Length: 345)
Name: NF13998_high_16
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_high_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 34898966 - 34899310
Alignment:
| Q |
1 |
accttccttaaagggggtcgaaaattgttgatccactttccatgacctaatcttgccatccttatggccagtccagaccatcttattcccgttgtcgacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34898966 |
accttccttaaagggggtcgaaaattgttgatccactttccatgacctaatcttgccatccttatggccagtccagaccatcttattcccgttgtcgacg |
34899065 |
T |
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| Q |
101 |
gtcaaacaaaatgtaggagaggtatcagcagattcataaaaaggcgcagcgtcctcatctcccctcctaacccttcctcccagaccgcaaccgtgttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899066 |
gtcaaacaaaatgtaggagaggtatcagcagattcataaaaaggtgcagcgtcctcatctcccctcctaacccttcctcccagaccgcaaccgtgttcat |
34899165 |
T |
|
| Q |
201 |
aggccttttgaaactcccacaccctcaccccactttcctgtccagcccacaactgtgtttcggtacatgcaatgtttctgaggaatttccctacctgagt |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899166 |
aggccttttgaaactcccacaccctcaccccacattcctgtccagcccacagctgtgtttcggtacatgcaatgtttctgaggaatttccctacctgagt |
34899265 |
T |
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| Q |
301 |
ctcccttaacggatgaggccttaactcaagacatggcggtctccc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899266 |
ctcccttaacggatgaggccttaactcaagacatggcggtctccc |
34899310 |
T |
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