View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_high_24 (Length: 288)
Name: NF13998_high_24
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38397085 - 38397141
Alignment:
| Q |
1 |
gcgtttatagaaggttgagtatttctgtgaatgcattcatgttagatctgcatctgg |
57 |
Q |
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| T |
38397085 |
gcgtttatagaaggttgagtatttctgtgaatgcattcatgttagatctgcatctgg |
38397141 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 38397320 - 38397362
Alignment:
| Q |
236 |
agctatcaacacatcaatccaaaaatttctggttttgcttcat |
278 |
Q |
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| T |
38397320 |
agctatcaacacatcaatccaaaaatttctggttttgcttcat |
38397362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 38397204 - 38397245
Alignment:
| Q |
120 |
caagaaacaacactgttgtattgtatattctatcttgaagtg |
161 |
Q |
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| T |
38397204 |
caagaaacaacactgttgtattgtatattctatcttgaagtg |
38397245 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34830655 - 34830599
Alignment:
| Q |
1 |
gcgtttatagaaggttgagtatttctgtgaatgcattcatgttagatctgcatctgg |
57 |
Q |
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||||||||||||| |||||| |||||| | || |||||||||||||||||| |||| |
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| T |
34830655 |
gcgtttatagaagtttgagtgtttctgcaattgtattcatgttagatctgcaactgg |
34830599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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