View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_high_28 (Length: 235)
Name: NF13998_high_28
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_high_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31010416 - 31010182
Alignment:
| Q |
1 |
cctgacggtaaaaaatatcaattaggcaagaccaagttcccaacactgcaataacaatcccaaacaccataattgctccatcaaaaaccaaacatttcca |
100 |
Q |
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| T |
31010416 |
cctgagggtaaaaaatatccattaggcaagaccaagttcccaacactgcaataacaatcccaaacaccataattgctccatcaaaaaccaaacatttcca |
31010317 |
T |
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| Q |
101 |
acccaattcatctctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaataacacaaacactgctcccaactagtgacaaaaaatcagca |
200 |
Q |
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| T |
31010316 |
acccaattcatctctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaataacacaaacactgctcccaactagtgacaaaaaatcagca |
31010217 |
T |
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| Q |
201 |
aagttaggtaccaaaaatgcgactaaacttaccac |
235 |
Q |
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| T |
31010216 |
aagttaggtaccaaaaatgcgactaaacttaccac |
31010182 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 9782324 - 9782499
Alignment:
| Q |
60 |
ccaaacaccataattgctccatcaaaaaccaaacatttccaacccaattcatctctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaa |
159 |
Q |
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||||| ||||||||||| ||||| ||||||| |||||||||||||| || || ||||||||| | |||||||||||||| |||||||| | ||||| |
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| T |
9782324 |
ccaaaaaccataattgccccatctgaaaccaagcatttccaacccaactcttccttaaaaaccatacaatgaaacaaagcaggcaacacaaaaccaagaa |
9782423 |
T |
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| Q |
160 |
taacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccac |
235 |
Q |
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| T |
9782424 |
caacacaaacactacttccaacaagtgacaaaaaatcagcaaaatttggcaccaaaactgccaccaaactcaccac |
9782499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 16353200 - 16353116
Alignment:
| Q |
129 |
tgaaacaaagcaggaaacacaaagctaagaataacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtacca |
213 |
Q |
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|||| |||||||| ||||||||| | ||| | || ||| |||||||| ||||| ||||| | |||||||||||| ||||| |||| |
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| T |
16353200 |
tgaatcaaagcagaaaacacaaatccaagcacaatacacacactgcttccaacaagtgaaagaaaatcagcaaaattaggcacca |
16353116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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