View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_high_30 (Length: 229)

Name: NF13998_high_30
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_high_30
NF13998_high_30
[»] chr1 (5 HSPs)
chr1 (20-215)||(47071215-47071410)
chr1 (20-91)||(1344712-1344783)
chr1 (26-92)||(525110-525175)
chr1 (56-95)||(20607427-20607466)
chr1 (29-90)||(26941016-26941077)
[»] chr4 (12 HSPs)
chr4 (20-92)||(55080743-55080815)
chr4 (20-100)||(17182483-17182563)
chr4 (20-87)||(22186883-22186950)
chr4 (20-51)||(54576376-54576407)
chr4 (20-97)||(11089680-11089760)
chr4 (55-92)||(24565344-24565381)
chr4 (56-101)||(37711333-37711378)
chr4 (56-93)||(53260715-53260752)
chr4 (33-90)||(56135908-56135965)
chr4 (56-96)||(37711132-37711172)
chr4 (56-92)||(41174555-41174591)
chr4 (64-92)||(45742108-45742136)
[»] chr3 (10 HSPs)
chr3 (20-89)||(40858729-40858798)
chr3 (27-93)||(37102156-37102222)
chr3 (28-90)||(37102321-37102383)
chr3 (20-90)||(42772196-42772266)
chr3 (31-90)||(21773957-21774016)
chr3 (27-90)||(30200098-30200161)
chr3 (23-93)||(220405-220474)
chr3 (20-56)||(24253886-24253922)
chr3 (56-92)||(24560215-24560251)
chr3 (56-92)||(34641200-34641236)
[»] chr7 (7 HSPs)
chr7 (20-90)||(23116269-23116339)
chr7 (31-90)||(48094068-48094127)
chr7 (20-86)||(39646633-39646699)
chr7 (31-92)||(17853045-17853106)
chr7 (32-93)||(48881735-48881796)
chr7 (28-92)||(37417805-37417869)
chr7 (57-93)||(48152191-48152227)
[»] chr6 (5 HSPs)
chr6 (29-92)||(21606852-21606915)
chr6 (55-92)||(3841295-3841332)
chr6 (56-93)||(30487303-30487340)
chr6 (31-95)||(30849919-30849983)
chr6 (20-92)||(31849274-31849346)
[»] chr2 (6 HSPs)
chr2 (27-89)||(39821840-39821902)
chr2 (56-93)||(36347538-36347575)
chr2 (55-92)||(42813829-42813866)
chr2 (27-90)||(1583248-1583311)
chr2 (56-93)||(23748305-23748342)
chr2 (56-92)||(15224904-15224940)
[»] chr8 (4 HSPs)
chr8 (56-92)||(1027058-1027094)
chr8 (20-95)||(29358345-29358420)
chr8 (27-93)||(9718486-9718552)
chr8 (55-92)||(41103502-41103539)
[»] scaffold0071 (1 HSPs)
scaffold0071 (32-90)||(52896-52954)
[»] chr5 (2 HSPs)
chr5 (29-90)||(22023542-22023603)
chr5 (56-92)||(7544134-7544170)
[»] scaffold0294 (1 HSPs)
scaffold0294 (56-88)||(15472-15504)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 47071215 - 47071410
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaaagaatttgaaaaaagcaaaatgaatt 119  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  47071215 tttataatgtccgtaatttaaaaaagaaaagttagtcttcccttcctaaacccttcatccaaacacacccttaaagaatttgaaaaaagcaaaatggact 47071314  T
Q  120 tgcataccgagatggatggactagaatgaagtgagtaaatttgatgatgatgtcaagttctcagttttcccgttagacatgccacaaaagtataat 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47071315 tgcataccgagatggatggagtagaatgaagtgagtaaatttgatgatgatgtcaagttctcagttttcccgttagacatgccacaaaagtataat 47071410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 1344712 - 1344783
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctt 91  Q
    |||| |||||||||||| |||||||||||| | ||| ||||| ||||||||||| |||||||||||| ||||    
T  1344712 tttacaatgtccgtaatttaaaaaagaaaaataaattttcccctcctaaaccctccatccaaacacatcctt 1344783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 525175 - 525110
Alignment:
Q  26 atgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||||||| ||||||||||||| ||||| |||| ||||||| || ||||||||||||| |||||    
T  525175 atgtccgtaatttaaaaaagaaaag-taatcctcccctcctaaatccatcatccaaacacatcctta 525110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 20607427 - 20607466
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaaag 95  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  20607427 cttcccctcctaaaccctccatccaaacacacccttaaag 20607466  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 26941016 - 26941077
Alignment:
Q  29 tccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||| | |||||||||||| | || |||||| |||||||||||  |||||||||||||||    
T  26941016 tccgtattttaaaaaagaaaattgaaccttcccctcctaaaccctcaatccaaacacaccct 26941077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 55080743 - 55080815
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||||||| |||||| |||||||||||||| | || |||| ||||||||||| ||||||||||||||||||    
T  55080743 tttataatgttcgtaatttaaaaaagaaaagtaagtcctcccatcctaaaccctccatccaaacacaccctta 55080815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 17182563 - 17182483
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaaagaattt 100  Q
    ||||||| |||  |||| |||||||||||||| ||||||||| ||||||| |||  ||||||||||||| ||||| |||||    
T  17182563 tttataacgtcaataatttaaaaaagaaaagtaaatcttcccctcctaaaacctctatccaaacacacctttaaataattt 17182483  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 22186883 - 22186950
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacac 87  Q
    ||||||||||||||||| |||||||||||||| | || |||| |  |||||||| |||||||||||||    
T  22186883 tttataatgtccgtaatttaaaaaagaaaagtgagtcctccccttttaaaccctccatccaaacacac 22186950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 54576407 - 54576376
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagt 51  Q
    ||||||||||||||||||||||||||||||||    
T  54576407 tttataatgtccgtaatctaaaaaagaaaagt 54576376  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 11089680 - 11089760
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaa---tcttcccttcctaaacccttcatccaaacacacccttaaagaa 97  Q
    ||||||| ||||||||| ||||||||||| || ||   ||||||| | ||||| |||  ||||||||||||||||||||||    
T  11089680 tttataaagtccgtaatttaaaaaagaaatgtaaaccatcttccccttctaaatcctcaatccaaacacacccttaaagaa 11089760  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 24565381 - 24565344
Alignment:
Q  55 tcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  24565381 tcttcccttcctaaaccttccatccaaacacaccctta 24565344  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 37711333 - 37711378
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaaagaatttg 101  Q
    |||||| ||||||||||| |||||||||||||||| |||| |||||    
T  37711333 cttcccctcctaaaccctccatccaaacacaccctaaaaggatttg 37711378  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 53260752 - 53260715
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  53260752 cttcccctcctaaaccctccatccaaacacacccttaa 53260715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 56135908 - 56135965
Alignment:
Q  33 taatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||| |||||||||||||| |  | |||| ||||||||||| ||||||||||||||||    
T  56135908 taatttaaaaaagaaaagtaagccctcccctcctaaaccctccatccaaacacaccct 56135965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 37711172 - 37711132
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaaaga 96  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  37711172 cttcccctcctaaaccctcaatccaaacacacccttaaaga 37711132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 41174555 - 41174591
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  41174555 cttcccctcctaaaccctccatccaaacacaccctta 41174591  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 45742108 - 45742136
Alignment:
Q  64 cctaaacccttcatccaaacacaccctta 92  Q
    |||||||||||||||||||||||||||||    
T  45742108 cctaaacccttcatccaaacacaccctta 45742136  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 40858729 - 40858798
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccc 89  Q
    ||||||||||||||||| |||||||||||| | || | |||| ||||||||||| |||||||||||||||    
T  40858729 tttataatgtccgtaatttaaaaaagaaaactaaaccctcccctcctaaaccctccatccaaacacaccc 40858798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 37102222 - 37102156
Alignment:
Q  27 tgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||||||| |||||| ||||| | || | |||| ||||||||||| |||||||||||||||||||    
T  37102222 tgtccgtaatttaaaaatgaaaactaaaccctcccctcctaaaccctccatccaaacacacccttaa 37102156  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 37102321 - 37102383
Alignment:
Q  28 gtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    ||||||||| ||||||||| |||| || |||||| |||||||||||  |||||||||||||||    
T  37102321 gtccgtaatttaaaaaagataagtaaaccttcccctcctaaaccctcaatccaaacacaccct 37102383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 42772196 - 42772266
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    ||||||||||||||||| | || ||| ||||| || |||||| ||||||||||| ||| ||||||||||||    
T  42772196 tttataatgtccgtaattttaagaagcaaagtaaaccttcccctcctaaaccctccattcaaacacaccct 42772266  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 21773957 - 21774016
Alignment:
Q  31 cgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||| ||||||  |||||| || | |||| ||||||||||||||||||||||||||||    
T  21773957 cgtaatttaaaaataaaaagtaaaccctcccctcctaaacccttcatccaaacacaccct 21774016  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 30200161 - 30200098
Alignment:
Q  27 tgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||||||| |||||| ||||| | || | |||| ||||||||||| ||||||||||||||||    
T  30200161 tgtccgtaatttaaaaatgaaaactaaaccctcccctcctaaaccctccatccaaacacaccct 30200098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 220474 - 220405
Alignment:
Q  23 ataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||||||||||| |||||| ||||| | || || |||| |||||||||| |||||||| ||||||||||    
T  220474 ataatgtccgtaatttaaaaatgaaaactaaacctcccct-cctaaaccctccatccaaatacacccttaa 220405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 24253886 - 24253922
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatc 56  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  24253886 tttataatgtccgtaatttaaaaaagaaaagtaaatc 24253922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 24560251 - 24560215
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| |||||||||||| |||||||||||||||||    
T  24560251 cttcccctcctaaacccttaatccaaacacaccctta 24560215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 34641200 - 34641236
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  34641200 cttcccctcctaaaccctccatccaaacacaccctta 34641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 23116339 - 23116269
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||| |||| ||||| |||||||||||||| |  | |||||||||||||||| ||||||||||||||||    
T  23116339 tttatagtgtctgtaatttaaaaaagaaaagtaagccctcccttcctaaaccctccatccaaacacaccct 23116269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 48094068 - 48094127
Alignment:
Q  31 cgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||| |||||||||||||| |||| |||| ||||||| ||| ||||||||||||||||    
T  48094068 cgtaatttaaaaaagaaaagtaaatcctcccctcctaaatcctacatccaaacacaccct 48094127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 39646633 - 39646699
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacaca 86  Q
    ||||||||||||||||| ||||||| |||||| | || |||| |||||||||||  |||||||||||    
T  39646633 tttataatgtccgtaatttaaaaaataaaagtgagtcatcccctcctaaaccctcaatccaaacaca 39646699  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 17853045 - 17853106
Alignment:
Q  31 cgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| |||||| ||||||| |  | |||| ||||||||||| ||||||||||||||||||    
T  17853045 cgtaatttaaaaatgaaaagtaagccctcccctcctaaaccctccatccaaacacaccctta 17853106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 48881735 - 48881796
Alignment:
Q  32 gtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    ||||| ||||||  |||||| || |||||| |||||||||||  ||||||||||||||||||    
T  48881735 gtaatttaaaaattaaaagtgaaccttcccctcctaaaccctcaatccaaacacacccttaa 48881796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 37417805 - 37417869
Alignment:
Q  28 gtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| || |||||| ||||||| || | |||| |||||||||||  |||||||||||||||||    
T  37417805 gtccgttatttaaaaatgaaaagtaaaccatcccctcctaaaccctcaatccaaacacaccctta 37417869  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 48152191 - 48152227
Alignment:
Q  57 ttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  48152191 ttccctttctaaacctttcatccaaacacacccttaa 48152227  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 21606915 - 21606852
Alignment:
Q  29 tccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||||| |||||| ||||||| || | |||| ||||||||||| ||||||||||||||||||    
T  21606915 tccgtaatttaaaaatgaaaagtaaaccctcccctcctaaaccctccatccaaacacaccctta 21606852  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 3841295 - 3841332
Alignment:
Q  55 tcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3841295 tcttcccctcctaaacccttcatccaaacacaccctta 3841332  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 30487340 - 30487303
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  30487340 cttcccctcctaaaccctccatccaaacacacccttaa 30487303  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 30849983 - 30849919
Alignment:
Q  31 cgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaaag 95  Q
    |||||| |||||| |||| || |||| |||| ||| |||||||||||||| ||| ||||||||||    
T  30849983 cgtaatttaaaaacgaaatgtaaatcctcccctcccaaacccttcatccatacatacccttaaag 30849919  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31849274 - 31849346
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| |||||||||| |||||| ||||||| || | |||| |||| ||| || |||| |||||||||||||    
T  31849274 tttatagtgtccgtaatttaaaaatgaaaagtgaaccctcccctcctgaactctccatctaaacacaccctta 31849346  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 39821840 - 39821902
Alignment:
Q  27 tgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccc 89  Q
    |||||||||| |||||||||||| | || | |||| ||||||||||| |||||||||||||||    
T  39821840 tgtccgtaatttaaaaaagaaaactaaaccctcccctcctaaaccctccatccaaacacaccc 39821902  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 36347575 - 36347538
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||| |||||||||||||||||||||||||||||||    
T  36347575 cttcccctcctaaacccttcatccaaacacacccttaa 36347538  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 42813829 - 42813866
Alignment:
Q  55 tcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  42813829 tcttcccctcctaaacccttcatccaaacacaccctta 42813866  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 1583248 - 1583311
Alignment:
Q  27 tgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||||||| |||||| ||||||| || | |||| ||||||||||| |||||||||| |||||    
T  1583248 tgtccgtaatttaaaaatgaaaagtgaaccctcccctcctaaaccctccatccaaacaaaccct 1583311  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 23748305 - 23748342
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  23748305 cttcccctcctaaaccctccatccaaacacacccttaa 23748342  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 15224904 - 15224940
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    |||||| |||||||||||| |||||||||||||||||    
T  15224904 cttcccctcctaaacccttgatccaaacacaccctta 15224940  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 1027058 - 1027094
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1027058 cttcccttcctaaacccttaatccaaacacaccctta 1027094  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 29358420 - 29358345
Alignment:
Q  20 tttataatgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaaag 95  Q
    |||||| |||||||||| ||||||  |||||| || |||| | ||||||||||| |||||||||||| ||| ||||    
T  29358420 tttatagtgtccgtaatttaaaaataaaaagtaaaccttctcctcctaaaccctccatccaaacacaacctaaaag 29358345  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 9718552 - 9718486
Alignment:
Q  27 tgtccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacacccttaa 93  Q
    |||||||||| |||||| |||||   || | |||| ||||||||||| |||||||||||||||||||    
T  9718552 tgtccgtaatttaaaaatgaaaatcgaaccctcccctcctaaaccctccatccaaacacacccttaa 9718486  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 41103539 - 41103502
Alignment:
Q  55 tcttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  41103539 tcttcccctcctaaaccctccatccaaacacaccctta 41103502  T

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Target: scaffold0071 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 52954 - 52896
Alignment:
Q  32 gtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    ||||| ||||||| |||||| | ||||||| |||||||||||  |||||||||||||||    
T  52954 gtaatttaaaaaataaaagtgagtcttcccatcctaaaccctcaatccaaacacaccct 52896  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 22023542 - 22023603
Alignment:
Q  29 tccgtaatctaaaaaagaaaagttaatcttcccttcctaaacccttcatccaaacacaccct 90  Q
    |||||||| || ||| ||||||| || | |||| ||||||||||| ||||||||||||||||    
T  22023542 tccgtaatttataaatgaaaagtaaaccctcccctcctaaaccctccatccaaacacaccct 22023603  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 7544170 - 7544134
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacaccctta 92  Q
    ||||||||||||||||||  |||||||||||||||||    
T  7544170 cttcccttcctaaaccctcaatccaaacacaccctta 7544134  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 15472 - 15504
Alignment:
Q  56 cttcccttcctaaacccttcatccaaacacacc 88  Q
    |||||||||||||||||| ||||||||||||||    
T  15472 cttcccttcctaaaccctccatccaaacacacc 15504  T

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