View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_low_1 (Length: 657)

Name: NF13998_low_1
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_low_1
NF13998_low_1
[»] chr1 (21 HSPs)
chr1 (19-547)||(51453870-51454381)
chr1 (19-260)||(51478322-51478563)
chr1 (550-650)||(44112679-44112779)
chr1 (550-650)||(45427743-45427843)
chr1 (550-649)||(41065155-41065254)
chr1 (550-650)||(48119630-48119730)
chr1 (550-650)||(35000111-35000211)
chr1 (550-650)||(35003296-35003396)
chr1 (550-650)||(38113193-38113293)
chr1 (550-650)||(38335920-38336020)
chr1 (550-650)||(45705827-45705927)
chr1 (550-650)||(46168385-46168485)
chr1 (550-650)||(45639730-45639830)
chr1 (550-650)||(26585464-26585564)
chr1 (550-605)||(14427349-14427404)
chr1 (550-636)||(43571098-43571184)
chr1 (550-636)||(48498974-48499060)
chr1 (548-636)||(2497574-2497662)
chr1 (550-636)||(5489778-5489864)
chr1 (548-636)||(4401327-4401416)
chr1 (548-636)||(7447826-7447913)
[»] chr8 (22 HSPs)
chr8 (550-650)||(34304790-34304890)
chr8 (550-650)||(35181518-35181618)
chr8 (550-650)||(18066716-18066816)
chr8 (548-650)||(33629991-33630093)
chr8 (550-650)||(16603624-16603724)
chr8 (548-636)||(29800962-29801050)
chr8 (547-635)||(30912575-30912663)
chr8 (550-636)||(42197447-42197533)
chr8 (548-636)||(20148760-20148848)
chr8 (548-636)||(42295195-42295283)
chr8 (548-636)||(26125635-26125723)
chr8 (548-636)||(42699257-42699345)
chr8 (550-636)||(2546998-2547084)
chr8 (550-636)||(11582768-11582854)
chr8 (550-636)||(29705364-29705450)
chr8 (550-636)||(36743495-36743581)
chr8 (550-638)||(16358843-16358932)
chr8 (550-634)||(1375544-1375628)
chr8 (602-650)||(10678150-10678198)
chr8 (556-636)||(31384672-31384752)
chr8 (550-636)||(2165975-2166061)
chr8 (550-636)||(5754905-5754991)
[»] chr3 (22 HSPs)
chr3 (550-650)||(9434126-9434226)
chr3 (550-650)||(34791831-34791931)
chr3 (550-650)||(51757595-51757695)
chr3 (550-650)||(4190263-4190363)
chr3 (550-650)||(10457890-10457990)
chr3 (550-650)||(25996270-25996370)
chr3 (550-650)||(52627975-52628075)
chr3 (550-636)||(40808867-40808953)
chr3 (547-634)||(27748562-27748649)
chr3 (550-636)||(25413683-25413769)
chr3 (550-636)||(42100690-42100776)
chr3 (550-636)||(45126940-45127026)
chr3 (550-638)||(53273694-53273782)
chr3 (550-636)||(24688414-24688500)
chr3 (550-636)||(42394431-42394517)
chr3 (550-636)||(46941055-46941141)
chr3 (550-636)||(54237098-54237184)
chr3 (548-636)||(53581870-53581958)
chr3 (550-636)||(36150132-36150218)
chr3 (550-636)||(40480751-40480837)
chr3 (590-636)||(51249350-51249396)
chr3 (550-636)||(54246160-54246246)
[»] chr2 (23 HSPs)
chr2 (550-650)||(43114559-43114659)
chr2 (547-650)||(11825652-11825755)
chr2 (539-650)||(41281972-41282083)
chr2 (550-650)||(12415458-12415558)
chr2 (550-650)||(12427518-12427618)
chr2 (550-650)||(16803970-16804070)
chr2 (550-650)||(16843252-16843352)
chr2 (550-650)||(18491707-18491807)
chr2 (548-633)||(6518484-6518568)
chr2 (550-650)||(966832-966932)
chr2 (548-648)||(4299420-4299520)
chr2 (554-638)||(34895751-34895835)
chr2 (572-650)||(4451948-4452026)
chr2 (570-650)||(12531661-12531740)
chr2 (550-634)||(43335777-43335861)
chr2 (550-636)||(1750416-1750502)
chr2 (550-636)||(4764738-4764824)
chr2 (550-636)||(19047159-19047245)
chr2 (550-636)||(30838634-30838720)
chr2 (550-636)||(34817788-34817874)
chr2 (548-636)||(43490413-43490501)
chr2 (550-636)||(12302265-12302351)
chr2 (550-636)||(16096749-16096835)
[»] chr7 (19 HSPs)
chr7 (550-650)||(40236921-40237021)
chr7 (550-650)||(33384872-33384973)
chr7 (550-650)||(27535229-27535329)
chr7 (550-650)||(31408631-31408731)
chr7 (550-650)||(31513289-31513389)
chr7 (548-636)||(43343636-43343724)
chr7 (548-636)||(44416946-44417034)
chr7 (550-636)||(42972854-42972940)
chr7 (548-638)||(4638209-4638299)
chr7 (548-636)||(10573749-10573837)
chr7 (548-636)||(44326178-44326266)
chr7 (550-636)||(5015397-5015483)
chr7 (550-636)||(35069723-35069809)
chr7 (551-636)||(26898414-26898499)
chr7 (550-636)||(9216304-9216389)
chr7 (550-636)||(24001024-24001110)
chr7 (550-636)||(42538443-42538529)
chr7 (550-633)||(43317445-43317528)
chr7 (550-615)||(39998410-39998475)
[»] chr5 (13 HSPs)
chr5 (550-650)||(32473392-32473492)
chr5 (550-650)||(17208076-17208176)
chr5 (183-277)||(42431626-42431718)
chr5 (183-260)||(42433365-42433442)
chr5 (548-636)||(5256995-5257083)
chr5 (550-650)||(30622717-30622816)
chr5 (550-636)||(7617135-7617221)
chr5 (550-636)||(22512307-22512393)
chr5 (550-636)||(33801471-33801557)
chr5 (550-636)||(2614661-2614747)
chr5 (550-636)||(18033984-18034070)
chr5 (550-636)||(41334675-41334761)
chr5 (550-620)||(33855071-33855141)
[»] chr4 (31 HSPs)
chr4 (550-650)||(55272374-55272474)
chr4 (550-650)||(17619150-17619250)
chr4 (550-650)||(32728359-32728459)
chr4 (550-650)||(711962-712062)
chr4 (554-638)||(48435589-48435673)
chr4 (548-638)||(35037005-35037095)
chr4 (548-650)||(38851513-38851615)
chr4 (548-636)||(27893854-27893942)
chr4 (550-628)||(960890-960968)
chr4 (548-638)||(3756256-3756346)
chr4 (550-628)||(49229684-49229762)
chr4 (548-636)||(43514698-43514786)
chr4 (550-650)||(46827704-46827804)
chr4 (550-636)||(27864566-27864652)
chr4 (550-636)||(27550311-27550397)
chr4 (550-636)||(28988475-28988561)
chr4 (550-638)||(48463460-48463548)
chr4 (550-636)||(1771278-1771364)
chr4 (550-636)||(23035982-23036068)
chr4 (550-636)||(33703143-33703229)
chr4 (586-636)||(39631139-39631189)
chr4 (550-636)||(55966358-55966444)
chr4 (550-635)||(28982835-28982920)
chr4 (548-636)||(31680902-31680990)
chr4 (548-632)||(41327559-41327643)
chr4 (584-650)||(19879990-19880056)
chr4 (550-636)||(41847973-41848059)
chr4 (550-636)||(41878408-41878494)
chr4 (586-636)||(43949813-43949863)
chr4 (550-636)||(45490325-45490411)
chr4 (602-650)||(36004114-36004162)
[»] scaffold0100 (1 HSPs)
scaffold0100 (550-650)||(35454-35554)
[»] chr6 (19 HSPs)
chr6 (139-257)||(18078747-18078865)
chr6 (550-650)||(33242405-33242505)
chr6 (550-638)||(33253915-33254003)
chr6 (182-260)||(18076829-18076907)
chr6 (548-636)||(24203999-24204087)
chr6 (548-650)||(27441542-27441644)
chr6 (550-636)||(7367551-7367637)
chr6 (550-636)||(13743233-13743319)
chr6 (550-636)||(13748733-13748819)
chr6 (550-636)||(26670021-26670107)
chr6 (548-633)||(30735982-30736067)
chr6 (550-633)||(7273350-7273433)
chr6 (38-105)||(18078871-18078938)
chr6 (550-636)||(7292749-7292835)
chr6 (550-636)||(9698345-9698431)
chr6 (550-636)||(26466801-26466887)
chr6 (550-638)||(3213402-3213490)
chr6 (550-638)||(30014345-30014433)
chr6 (550-650)||(31109220-31109320)
[»] scaffold0003 (1 HSPs)
scaffold0003 (548-650)||(45717-45819)
[»] scaffold0119 (1 HSPs)
scaffold0119 (550-636)||(687-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (550-636)||(11253-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (550-636)||(112657-112743)


Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 51454381 - 51453870
Alignment:
Q  19 gtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454381 gtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaaca 51454282  T
Q  119 ttggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactg 218  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51454281 ttggcagtaggttgtgtttcttgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactg 51454182  T
Q  219 tgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtttttcagggatttgattaattagtttaacatagaatagagga 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454181 tgtggttgttctcttcctccgccattgaaatttcgaatgcagagaatggagtttttgtttttcagggatttgattaattagtttaacatagaatagagga 51454082  T
Q  319 tgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgtttacttctactgctactgctgaaaatggcgaggtggagaaac 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51454081 tgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgtttacttctactgctactgctgaaaatggcgaggtggagaaaa 51453982  T
Q  419 ctgaacgttgagaatgtttgttacttgtattaggcatcgcatcagcgtggtatagtgtaaggagtggggtccataaaaccgattctaaaatagcaataag 518  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||| ||||||||||||||||||||||||||||||||||    
T  51453981 ctgaacgttgagaatgtttgttacttgtattaggcatcgcatc----------------aggagt-gggtccataaaaccgattctaaaatagcaataag 51453899  T
Q  519 tcataacttgctcattaaggttttttccg 547  Q
    |||||||||||||||||||||||||||||    
T  51453898 tcataacttgctcattaaggttttttccg 51453870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 51478563 - 51478322
Alignment:
Q  19 gtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaaca 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  51478563 gtcatcacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatcaccatcctccaacggtaccatttccgcgccaaca 51478464  T
Q  119 ttggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactg 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||| |||||||||||||||||||||| ||||||     
T  51478463 ttggcagtgggttgtgtttctcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgacta 51478364  T
Q  219 tgtggttgttctcttcctccgccattgaaatttcaaatgcag 260  Q
    |||  |||||||||||||| ||||||||||||||||||||||    
T  51478363 tgtcattgttctcttcctcagccattgaaatttcaaatgcag 51478322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 44112679 - 44112779
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 44112778  T
Q  650 a 650  Q
    |    
T  44112779 a 44112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 45427843 - 45427743
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||| | | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 45427744  T
Q  650 a 650  Q
    |    
T  45427743 a 45427743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 550 - 649
Target Start/End: Original strand, 41065155 - 41065254
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||  |||||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  41065155 aaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctttc 41065254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 48119630 - 48119730
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 48119729  T
Q  650 a 650  Q
    |    
T  48119730 a 48119730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 35000211 - 35000111
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || ||||| ||||||||||||||| ||| || |||||||||||||| || |||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctttc 35000112  T
Q  650 a 650  Q
    |    
T  35000111 a 35000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 35003296 - 35003396
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctttc 35003395  T
Q  650 a 650  Q
    |    
T  35003396 a 35003396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 38113293 - 38113193
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| ||||||||||||||||| || |||||||    
T  38113293 aaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctttc 38113194  T
Q  650 a 650  Q
    |    
T  38113193 a 38113193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 38335920 - 38336020
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||||||  |||||||||   ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 38336019  T
Q  650 a 650  Q
    |    
T  38336020 a 38336020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 45705827 - 45705927
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||| ||||||| | ||||||||||||  |||||||||||  ||||||||| |||||||||| ||| ||||||||||||||||| || |||||||    
T  45705827 aaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 45705926  T
Q  650 a 650  Q
    |    
T  45705927 a 45705927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 46168385 - 46168485
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||| |  |||||||||||   |||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  46168385 aaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 46168484  T
Q  650 a 650  Q
    |    
T  46168485 a 46168485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 45639830 - 45639730
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  ||| ||||| ||| |||||||||| |||||||||||| |||| || |||||||    
T  45639830 aaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctttc 45639731  T
Q  650 a 650  Q
    |    
T  45639730 a 45639730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 26585464 - 26585564
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||| ||||||||  |||||||||||||  ||||||||||  ||||||||| ||| ||||| |||| |||||||| ||| |||| || |||||||    
T  26585464 aaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctttc 26585563  T
Q  650 a 650  Q
    |    
T  26585564 a 26585564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 605
Target Start/End: Original strand, 14427349 - 14427404
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcatta 605  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 43571184 - 43571098
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43571098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 48499060 - 48498974
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 48498974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 2497662 - 2497574
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||  |||| ||| |||||||||| |||||||||||||||    
T  2497662 gaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaacca 2497574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 5489778 - 5489864
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 5489864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 4401327 - 4401416
Alignment:
Q  548 gaaaaatgttacatgaaca-tcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||| |||||||||| || |||| || |||||   |||||||||  |||| ||||| || |||||||||| |||||||||||||||    
T  4401327 gaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaacca 4401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 7447826 - 7447913
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||||| |||| || ||||  | |||||||||  |||| ||||  || |||||| ||| |||||||||||||||    
T  7447826 gaaaaatgttacatgaacatcctttattcctacatcccattgtacac-ccatgtattacagatattttgataagttcatctcacaacca 7447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 34304790 - 34304890
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 34304889  T
Q  650 a 650  Q
    |    
T  34304890 a 34304890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 35181518 - 35181618
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 35181617  T
Q  650 a 650  Q
    |    
T  35181618 a 35181618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 18066816 - 18066716
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||  ||||||||||   |||| |||||||| ||||| |||||||||||||||||||||| || |||||||    
T  18066816 aaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 18066717  T
Q  650 a 650  Q
    |    
T  18066716 a 18066716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 650
Target Start/End: Complemental strand, 33630093 - 33629991
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctt 647  Q
    ||||||||||||| ||||| | |||||||||||||   |||||||||   |||||||||||||||||| |||||||||||||||||| ||| || |||||    
T  33630093 gaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctt 33629994  T
Q  648 tca 650  Q
    |||    
T  33629993 tca 33629991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 16603724 - 16603624
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||| ||| | |||||||||||||  |||| |||||  |||||||||  ||||||||||||| ||||||||||||||||| || |||||||    
T  16603724 aaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctttc 16603625  T
Q  650 a 650  Q
    |    
T  16603624 a 16603624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 29801050 - 29800962
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  29801050 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 29800962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 30912663 - 30912575
Alignment:
Q  547 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacc 635  Q
    |||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| ||||||||||||||    
T  30912663 ggaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 42197533 - 42197447
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| |||||| || ||||| | |||| |||||  ||| |||||||| |||||||||| |||||||||||||||    
T  42197533 aaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaacca 42197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 20148760 - 20148848
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| |||||||||||||||    
T  20148760 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 20148848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 42295195 - 42295283
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  42295195 gaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaacca 42295283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 26125635 - 26125723
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| | |||| |||||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 26125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 42699257 - 42699345
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||| ||| ||||| |||| |||||||||||||||    
T  42699257 gaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaacca 42699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 2546998 - 2547084
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaacca 2547084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 11582768 - 11582854
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 11582854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 29705364 - 29705450
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaacca 29705450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 36743581 - 36743495
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 36743495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 638
Target Start/End: Complemental strand, 16358932 - 16358843
Alignment:
Q  550 aaaatgttacat-gaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    |||||||||||| ||| | | ||||||||||||| ||||||||||   ||||||||| | | |||||| ||| |||||||||||||||||    
T  16358932 aaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccata 16358843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 1375544 - 1375628
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaac 634  Q
    ||||| ||||||||||| | |||| |||||||| | |||||||||  |||  |||||||| |||||||||| || ||||||||||    
T  1375544 aaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaac 1375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 650
Target Start/End: Complemental strand, 10678198 - 10678150
Alignment:
Q  602 attagggacattttggtaatttcatctcacaaccatagttgctctttca 650  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctctttca 10678150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 31384672 - 31384752
Alignment:
Q  556 ttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||| | |||| || ||||  |||||||||||  |||| |||||| | |||||||||| |||||||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaacca 31384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 2166061 - 2165975
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||| ||||||||||| |||||| || ||||| | |||||| ||  |||| ||||| || |||||||||| ||||||||| |||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataacca 2165975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 5754905 - 5754991
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | ||||||||   |||  |||||||| |||||||||| |||||||||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaacca 5754991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 9434126 - 9434226
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 9434225  T
Q  650 a 650  Q
    |    
T  9434226 a 9434226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 34791831 - 34791931
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||||||||||||||||| || |||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctttc 34791930  T
Q  650 a 650  Q
    |    
T  34791931 a 34791931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 51757595 - 51757695
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||| |||||| |||| | ||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| || |||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctttc 51757694  T
Q  650 a 650  Q
    |    
T  51757695 a 51757695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 4190363 - 4190263
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| | ||| ||||| || |||||||||| ||||||||||||||||| || |||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctttc 4190264  T
Q  650 a 650  Q
    |    
T  4190263 a 4190263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 10457990 - 10457890
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| || |||||||||||||| || |||||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 10457891  T
Q  650 a 650  Q
    |    
T  10457890 a 10457890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 25996270 - 25996370
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||   ||||||||||  |||  |||| |||||||||||||| ||||||||||||||||| || |||||||    
T  25996270 aaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctttc 25996369  T
Q  650 a 650  Q
    |    
T  25996370 a 25996370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 52628075 - 52627975
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    |||||||||| |||||| | ||||||||||||  ||||||||||| |||||||||| | | |||||||||| |||||||||||| |||| || |||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctttc 52627976  T
Q  650 a 650  Q
    |    
T  52627975 a 52627975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 40808867 - 40808953
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| |||||| || ||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 40808953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 634
Target Start/End: Original strand, 27748562 - 27748649
Alignment:
Q  547 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaac 634  Q
    |||||||||||||||||||| | |||| ||||||||   ||| ||||| | ||| |||||||| |||||||||| |||||||||||||    
T  27748562 ggaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaac 27748649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 25413683 - 25413769
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||||||| ||||| |||| |||||||||||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaacca 25413769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 42100690 - 42100776
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 45127026 - 45126940
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 45126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 638
Target Start/End: Complemental strand, 53273782 - 53273694
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||| |||||||||||||| || || ||   ||||||||   |||| |||||||| |||||||||| |||||||||||||||||    
T  53273782 aaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 53273694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 24688500 - 24688414
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24688414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 42394517 - 42394431
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42394431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 46941055 - 46941141
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||    |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 46941141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 54237098 - 54237184
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 54237184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 53581958 - 53581870
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||||   |||| |||||||| | ||||||||    ||| |||||||| |||||| ||| |||||||||||||||    
T  53581958 gaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaacca 53581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 36150132 - 36150218
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||| | | |||| |||||||| | ||| |||||   ||| || ||||| |||||||||| |||||||||||||||    
T  36150132 aaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaacca 36150218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 40480751 - 40480837
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |||||  | | ||||||||    ||| |||||||| |||||||||| |||||||||||||||    
T  40480751 aaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaacca 40480837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 636
Target Start/End: Original strand, 51249350 - 51249396
Alignment:
Q  590 tacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||| |||||||||| ||| |||||||||| |||||||||||||||    
T  51249350 tacacctcatgcattaaggatattttggtaaattcatctcacaacca 51249396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 54246246 - 54246160
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| ||||| || ||||| |||| |||||||||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaacca 54246160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 43114559 - 43114659
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 43114658  T
Q  650 a 650  Q
    |    
T  43114659 a 43114659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 547 - 650
Target Start/End: Complemental strand, 11825755 - 11825652
Alignment:
Q  547 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctct 646  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| |||| || ||||    
T  11825755 ggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctct 11825656  T
Q  647 ttca 650  Q
    ||||    
T  11825655 ttca 11825652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 650
Target Start/End: Complemental strand, 41282083 - 41281972
Alignment:
Q  539 ttttttccggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  41282083 ttttttcttgaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccata 41281984  T
Q  639 gttgctctttca 650  Q
     || ||||||||    
T  41281983 ctttctctttca 41281972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 12415558 - 12415458
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12415459  T
Q  650 a 650  Q
    |    
T  12415458 a 12415458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 12427618 - 12427518
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12427519  T
Q  650 a 650  Q
    |    
T  12427518 a 12427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 16803970 - 16804070
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16804069  T
Q  650 a 650  Q
    |    
T  16804070 a 16804070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 16843252 - 16843352
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16843351  T
Q  650 a 650  Q
    |    
T  16843352 a 16843352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 18491707 - 18491807
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||| | |||||||||||| ||||||||||||||||| || |||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctttc 18491806  T
Q  650 a 650  Q
    |    
T  18491807 a 18491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 6518568 - 6518484
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 633  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6518568 gaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 966932 - 966832
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| | || ||||||||| |||||||||||| |||| || |||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctttc 966833  T
Q  650 a 650  Q
    |    
T  966832 a 966832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 548 - 648
Target Start/End: Complemental strand, 4299520 - 4299420
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctt 647  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| |||||||||||| |||| || |||||    
T  4299520 gaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactctt 4299421  T
Q  648 t 648  Q
    |    
T  4299420 t 4299420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 554 - 638
Target Start/End: Complemental strand, 34895835 - 34895751
Alignment:
Q  554 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| ||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcata 34895751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 4452026 - 4451948
Alignment:
Q  572 taatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttca 650  Q
    ||||||||||   ||||||||||   |||||||||||| |||||||||| ||||||||||||||||| || ||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttca 4451948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 650
Target Start/End: Complemental strand, 12531740 - 12531661
Alignment:
Q  570 tttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttca 650  Q
    ||||||||||||| | ||||||||| ||| |||||| || | ||||||||| ||||||||||||||||| || ||||||||    
T  12531740 tttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttca 12531661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 634
Target Start/End: Complemental strand, 43335861 - 43335777
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaac 634  Q
    ||||||||| |||||||||||||| || |||||   ||||||||   |||| |||||||| |||||||||| |||||||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 43335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 1750416 - 1750502
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 1750502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 4764824 - 4764738
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| |||||| || ||||| |||||||||||  |||| ||||   | |||||||||| |||||||||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaacca 4764738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 19047159 - 19047245
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 19047245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 30838634 - 30838720
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||   ||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 30838720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 34817874 - 34817788
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| ||| ||||   |||||||||  |||||| || | |||||||||||| |||||||||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaacca 34817788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 43490501 - 43490413
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| ||||||||| |||||    
T  43490501 gaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataacca 43490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 12302351 - 12302265
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  12302351 aaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 12302265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 16096749 - 16096835
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | ||| |||||  |||| |||||||| |||||||| | || ||||||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaacca 16096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 40236921 - 40237021
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctttc 40237020  T
Q  650 a 650  Q
    |    
T  40237021 a 40237021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 33384872 - 33384973
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacac-tattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctcttt 648  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||  |||||||||||||||||||||||| |||||||||||| |||| || ||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctcttt 33384971  T
Q  649 ca 650  Q
    ||    
T  33384972 ca 33384973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 27535329 - 27535229
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||  |||  ||||||||||||||||||||||||||| ||| || |||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctttc 27535230  T
Q  650 a 650  Q
    |    
T  27535229 a 27535229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 31408731 - 31408631
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   ||||||||| ||| |||||||||| ||||| ||||||||||| || |||||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctttc 31408632  T
Q  650 a 650  Q
    |    
T  31408631 a 31408631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 31513289 - 31513389
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    |||||||||||||||||   ||||||||||||| |||||||| ||  ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  31513289 aaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 31513388  T
Q  650 a 650  Q
    |    
T  31513389 a 31513389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 43343724 - 43343636
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 43343636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 44417034 - 44416946
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 44416946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 42972854 - 42972940
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||| |||||||| |||| || ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 548 - 638
Target Start/End: Complemental strand, 4638299 - 4638209
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||||||||| | |||| |||||||| | |||||||||  |||  |||| ||| |||||||||| |||||||||||||||||    
T  4638299 gaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccata 4638209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 10573749 - 10573837
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| | |||| |||||||  |||||||||||  |||| |||||| | |||||||||| |||||||||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaacca 10573837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 44326178 - 44326266
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| |||||||||||||||    
T  44326178 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 44326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 5015397 - 5015483
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 5015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 35069723 - 35069809
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 35069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 26898499 - 26898414
Alignment:
Q  551 aaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||| | |||| |||||||| | ||||||||   |||| |||||||| |||||||||| ||||||| |||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaacca 26898414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 9216304 - 9216389
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || || |  |||||||||||  |||||||||| || |||||||||| |||||||||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaagttcatctcacaacca 9216389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 24001110 - 24001024
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24001024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 42538529 - 42538443
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42538443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 43317445 - 43317528
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 633  Q
    ||||||||||||||||| |||||| ||||||||   ||||||||    |||| ||||||| |||||| ||| ||||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaa 43317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 615
Target Start/End: Original strand, 39998410 - 39998475
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacatttt 615  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  |||| |||||||| |||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 32473492 - 32473392
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctttc 32473393  T
Q  650 a 650  Q
    |    
T  32473392 a 32473392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 17208076 - 17208176
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    |||||||||| |||||| | |||||||||||||  ||||||||||  ||||||||| |||||||||||||| ||||||||||||||||| || |||||||    
T  17208076 aaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctttc 17208175  T
Q  650 a 650  Q
    |    
T  17208176 a 17208176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 42431626 - 42431718
Alignment:
Q  183 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtt 277  Q
    |||||||||||||||||||||| ||||||||| |  ||| |||||||||||||||||||||||||||||| |||| || |||  |||||||||||    
T  42431626 tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagggaa--gagtttttgtt 42431718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 42433442 - 42433365
Alignment:
Q  183 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 260  Q
    |||| ||||||||||||| ||| | |||||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  42433442 tgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatgcag 42433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 5256995 - 5257083
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| ||||||||||||||||||||||||||    
T  5256995 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 5257083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 30622816 - 30622717
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |   ||||||||| ||| |||||||||| || |||||||||||||| || |||||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 30622718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 7617135 - 7617221
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |||||||| | ||| |||||  |||| |||||||| |||||||||| |||||||||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaacca 7617221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 22512307 - 22512393
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaacca 22512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 33801471 - 33801557
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| |||| |  ||||| | |||||||||  |||| |||||||| ||||| |||| |||||||||||||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaacca 33801557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 2614747 - 2614661
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 2614661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 18033984 - 18034070
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 18034070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 41334761 - 41334675
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| ||||||||   ||| |||||   ||| |||||||| |||||||||| |||||||||||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 41334675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 620
Target Start/End: Complemental strand, 33855141 - 33855071
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaa 620  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||| ||||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 55272474 - 55272374
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 55272375  T
Q  650 a 650  Q
    |    
T  55272374 a 55272374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 17619250 - 17619150
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||    
T  17619250 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 17619151  T
Q  650 a 650  Q
    |    
T  17619150 a 17619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 32728359 - 32728459
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||||||||| |||| |||||||||||| |||| || |||||||    
T  32728359 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctttc 32728458  T
Q  650 a 650  Q
    |    
T  32728459 a 32728459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 711962 - 712062
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| ||| |||||||||| |||||||||||| |||| || |||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctttc 712061  T
Q  650 a 650  Q
    |    
T  712062 a 712062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 554 - 638
Target Start/End: Complemental strand, 48435673 - 48435589
Alignment:
Q  554 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| ||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcata 48435589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 638
Target Start/End: Original strand, 35037005 - 35037095
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    |||||||||||||||| || | ||||| ||||||| |||||||||||  ||||||||| ||| |||||||||| |||||||||||||||||    
T  35037005 gaaaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccata 35037095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 650
Target Start/End: Original strand, 38851513 - 38851615
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctt 647  Q
    ||||||||||||||||| ||| ||||||||||||   || |||||||  ||||||||| |||||||||| ||| ||||||||||||||||| || |||||    
T  38851513 gaaaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 38851612  T
Q  648 tca 650  Q
    |||    
T  38851613 tca 38851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 27893942 - 27893854
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| ||||||||||||||||||||||||||    
T  27893942 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 27893854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 628
Target Start/End: Complemental strand, 960968 - 960890
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 628  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   || |||||||||||||||||||| |||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 638
Target Start/End: Complemental strand, 3756346 - 3756256
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| ||||| |||| || ||||||||| ||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcata 3756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 628
Target Start/End: Complemental strand, 49229762 - 49229684
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 628  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||| ||| ||| |||||| |||||||    
T  49229762 aaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 43514786 - 43514698
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| |||||||||||||||    
T  43514786 gaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 46827804 - 46827704
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| | || ||||||||| || ||||||||| |||| || |||||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctttc 46827705  T
Q  650 a 650  Q
    |    
T  46827704 a 46827704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 27864566 - 27864652
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 27864652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 27550311 - 27550397
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| ||||||| |||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaacca 27550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 28988475 - 28988561
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| ||||||||   |||||||||  |||||| ||||||||||||| ||| ||||||||| |||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataacca 28988561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 638
Target Start/End: Complemental strand, 48463548 - 48463460
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    |||||||||||| |||| |||||| |||||||    ||||||||   |||| |||||||| |||||||||| |||||||||||||||||    
T  48463548 aaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 48463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 1771364 - 1771278
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| ||||| || |||||| ||| |||||||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 23035982 - 23036068
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||| || |||| || ||||| |||||||||||   ||  |||||||| ||||| |||| |||||||||||||||    
T  23035982 aaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaacca 23036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 33703143 - 33703229
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |  ||||   ||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 33703229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 586 - 636
Target Start/End: Original strand, 39631139 - 39631189
Alignment:
Q  586 attgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  39631139 attgtacacctcatgtattagggatattttggtaagttcatctcacaacca 39631189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 55966444 - 55966358
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| | |||| |||||||  | ||||||||   |||| |||||||| |||||||||| |||||||||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 28982920 - 28982835
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacc 635  Q
    ||||||||||||||||| | |||| |  ||||| ||||||||||   |||  |||||||| |||||||||| ||||||||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 636
Target Start/End: Original strand, 31680902 - 31680990
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| | |||| |||||| |||||||  | |||||||||  | |  |||||||| |||||||||| |||||||||||||||    
T  31680902 gaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaacca 31680990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 632
Target Start/End: Complemental strand, 41327643 - 41327559
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcaca 632  Q
    ||||||||||||||  ||| | |||| ||| |||| | ||||||||| | ||||| || |||||||||||||| |||||||||||    
T  41327643 gaaaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcaca 41327559  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 650
Target Start/End: Original strand, 19879990 - 19880056
Alignment:
Q  584 ctattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttca 650  Q
    |||||||||||  |||  |||| |||||||||||||| |||||||||||| |||| || ||||||||    
T  19879990 ctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttca 19880056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 41847973 - 41848059
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||| ||||||| |||  ||| ||||   |||||||||  |||||||||| |||||||||| || |||||| ||||||||    
T  41847973 aaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaacca 41848059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 41878408 - 41878494
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| ||||||||   |||||||||   || ||||||||| |||||| ||| |||||||||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaacca 41878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 636
Target Start/End: Complemental strand, 43949863 - 43949813
Alignment:
Q  586 attgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  43949863 attgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43949813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 45490411 - 45490325
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||||||||   |||| | |||||  | ||||||||| ||||| |||||||| | ||| |||| |||||||||||||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaacca 45490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 602 - 650
Target Start/End: Complemental strand, 36004162 - 36004114
Alignment:
Q  602 attagggacattttggtaatttcatctcacaaccatagttgctctttca 650  Q
    ||||||||||||||| ||| || |||||||||||||| || ||||||||    
T  36004162 attagggacattttgataaatttatctcacaaccatactttctctttca 36004114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 35554 - 35454
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    |||||||||||| |||| |||||||||||||||  ||||||||||  |||||||||||||||| ||||||| ||||||||||||||||| || |||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctttc 35455  T
Q  650 a 650  Q
    |    
T  35454 a 35454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 18078865 - 18078747
Alignment:
Q  139 tcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctcc 238  Q
    ||||||||||||||||||||||||||| |||   || ||||  |||||| ||||||||||||| ||| ||||||||||| ||  | ||||||| ||||||    
T  18078865 tcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtgactatgacgctgttctcgtcctcc 18078766  T
Q  239 gccattgaaatttcaaatg 257  Q
    |||||||||||||||||||    
T  18078765 gccattgaaatttcaaatg 18078747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 33242405 - 33242505
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||  |||| |||| |||||||||||||| |||||||||||| |||| || |||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctttc 33242504  T
Q  650 a 650  Q
    |    
T  33242505 a 33242505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 638
Target Start/End: Original strand, 33253915 - 33254003
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| ||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcata 33254003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 18076907 - 18076829
Alignment:
Q  182 gtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 260  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||| ||||||| ||||||||    
T  18076907 gtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcag 18076829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 24204087 - 24203999
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaacca 24203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 650
Target Start/End: Original strand, 27441542 - 27441644
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctt 647  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||||||||||| || |||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 27441641  T
Q  648 tca 650  Q
    |||    
T  27441642 tca 27441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 7367551 - 7367637
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||| |||||||||||||| ||||||||   ||||||||   |||| |||||||| |||||||||| |||||||||||||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 7367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 13743319 - 13743233
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13743233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 13748819 - 13748733
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 26670107 - 26670021
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 26670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 633
Target Start/End: Original strand, 30735982 - 30736067
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 633  Q
    |||||||||||||||||||   |||| || ||||| | ||||||||| ||||| ||||| || |||||||||| ||||||||||||    
T  30735982 gaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaa 30736067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 7273433 - 7273350
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 633  Q
    ||||||||||||||||| | |||| || |||||  ||||||||||  |||| ||||| || |||||||||| ||||||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaa 7273350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 18078938 - 18078871
Alignment:
Q  38 ttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgt 105  Q
    |||||||| ||| ||| ||| |||||||||| |||| ||||||||||| || ||||||||||||||||    
T  18078938 ttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgt 18078871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 7292749 - 7292835
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||| ||||| |||||| ||||||||   ||| |||||   ||| |||||||| |||||||||| |||||||||||||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 7292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Complemental strand, 9698431 - 9698345
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 9698345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 26466801 - 26466887
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    |||||||||||| |||| | |||| || ||||| | |||||||||  |||| |||||||  |||||||||| |||||||||||||||    
T  26466801 aaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaacca 26466887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 638
Target Start/End: Original strand, 3213402 - 3213490
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    |||||||||||| |||| | |||| |||||||    |||||||||  |||| |||| ||| |||||||||| ||||| |||||||||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccata 3213490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 638
Target Start/End: Original strand, 30014345 - 30014433
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 638  Q
    ||||||||||||||||| | |||| || ||||  | ||| ||||   |||| |||||| | |||||||||| |||||||||||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccata 30014433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 31109320 - 31109220
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctttc 649  Q
    ||||||||||||||||| | ||||||||||||  | ||| |||||  |||||| |||||| |||||| ||| |||| || || |||| | || |||||||    
T  31109320 aaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctttc 31109221  T
Q  650 a 650  Q
    |    
T  31109220 a 31109220  T

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Target: scaffold0003 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 650
Target Start/End: Complemental strand, 45819 - 45717
Alignment:
Q  548 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagttgctctt 647  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||||||||||| || |||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 45720  T
Q  648 tca 650  Q
    |||    
T  45719 tca 45717  T

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Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 687 - 773
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 773  T

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Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 11253 - 11339
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||| |||||||||   |||| |||||||| | |||||||||  |||  |||||||| |||||||||| |||||||||||||||    
T  11253 aaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaacca 11339  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 112657 - 112743
Alignment:
Q  550 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 636  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 112743  T

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