View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_11 (Length: 421)
Name: NF13998_low_11
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 10583759 - 10583932
Alignment:
| Q |
1 |
taatttagtaactacgtatcttgttatatatcccctatatcaaatgctaataatattttggaggataatgatgttatgcaaggtaaacacctctatttaa |
100 |
Q |
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| T |
10583759 |
taatttagttactacgtaccttgttatatatcccctatatcaaatactaataatattttggaggataatgatgttatgcaaggtaa--acctctatttaa |
10583856 |
T |
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| Q |
101 |
aataaaactacttggcatt-aagttattatcttaagaaccaccttttcttagcagttagaaatcactttagcgata |
175 |
Q |
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| T |
10583857 |
aataaaactacttcgcattgaagttattatcttaaggaccaccttttcttaacatttagaaatcactttagtgata |
10583932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 10583584 - 10583490
Alignment:
| Q |
306 |
cttggattgccaagctaacacacattcagtaacaaaattaagctcaaacagaatttcgtccaaattgtaattaactaggagcatcggtttctttc |
400 |
Q |
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| T |
10583584 |
cttggattgccaagctaacacacattcagtaacaaaattaagctcaaagagaatttcaaccaaattgtaattaactaggagcatcggtttctttc |
10583490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 10584092 - 10584143
Alignment:
| Q |
157 |
agaaatcactttagcgatagccttttatatcacgttgcaaagttaaattaga |
208 |
Q |
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| T |
10584092 |
agaaatcactttagcgatagccttttatatcacgttgcaaagttaaattaga |
10584143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 10583765 - 10583715
Alignment:
| Q |
200 |
taaattagagctaaaaaggcttgtgataagctagaattttgggtttgatga |
250 |
Q |
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| T |
10583765 |
taaattagagctaaaaaggcttgtgataagctagaattttgggtttgatga |
10583715 |
T |
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