View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_low_12 (Length: 384)

Name: NF13998_low_12
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_low_12
NF13998_low_12
[»] chr4 (6 HSPs)
chr4 (7-337)||(2896216-2896547)
chr4 (139-307)||(2887838-2888005)
chr4 (147-288)||(2878334-2878475)
chr4 (6-95)||(2888063-2888152)
chr4 (9-74)||(2878582-2878647)
chr4 (337-365)||(2896564-2896592)
[»] chr2 (3 HSPs)
chr2 (142-287)||(44222320-44222465)
chr2 (164-287)||(44210141-44210264)
chr2 (185-287)||(44233183-44233285)
[»] chr7 (7 HSPs)
chr7 (205-263)||(39573967-39574025)
chr7 (224-269)||(39588464-39588509)
chr7 (214-278)||(39367000-39367064)
chr7 (205-273)||(39563358-39563426)
chr7 (224-264)||(1084088-1084128)
chr7 (214-278)||(39339556-39339620)
chr7 (214-278)||(39354397-39354461)
[»] chr1 (1 HSPs)
chr1 (220-264)||(2159897-2159941)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 2896216 - 2896547
Alignment:
Q  7 gagaaatgaagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcctaaagagtagtttatatcagtgtaagtatatat 106  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2896216 gagaaatgaagatccttagaaccaggagcaggtttgcctaattctactataagttgcttgtttctcctaaagaatagtttatatcagtgtaagtatatat 2896315  T
Q  107 tgttacaataatattatttatactata-gctcttaaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgt 205  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896316 tgttacaatattattatttatactataagttcttaaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgt 2896415  T
Q  206 tcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896416 tcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatatt 2896515  T
Q  306 agcatattagctaccaacaagaattattgtta 337  Q
    ||||||||||||||||||||||||||| ||||    
T  2896516 agcatattagctaccaacaagaattatggtta 2896547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 2888005 - 2887838
Alignment:
Q  139 taaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaa 238  Q
    |||||| ||||||||||||||||||||||||||||||  || |||||||||||  |||| |||| |||||||||||||||| | ||||||||||||||||    
T  2888005 taaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctagagtaagttcttgtgctgaactcgaaacttccaacatccaa 2887906  T
Q  239 gttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattag 307  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  2887905 gttgctggattatagccatctttgattttactaaccccttcaatgctct-aaacaacagaaaatattag 2887838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 2878475 - 2878334
Alignment:
Q  147 cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctgg 246  Q
    ||||||| || | |||||||||||||||||| |||||||||||| ||||||| | |  ||||||||||| ||| || ||||| |||||||| ||||||||    
T  2878475 cttacctatatagctcagaatttttgtatatctcatgaaaatcagcacctaatgcaacttcttgtgctggactcgtcacttctaacatccatgttgctgg 2878376  T
Q  247 attatagccatctttaattttactaaccccttcgatgctcta 288  Q
     ||||| ||||| || |||||||| || ||||| || |||||    
T  2878375 gttatatccatcgtttattttacttactccttcaatactcta 2878334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 2888152 - 2888063
Alignment:
Q  6 agagaaatgaagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcctaaagagtagtttatatcagtg 95  Q
    |||||||| |||||| || |||||||| | ||||||||| |||||| |||||||||||||||||||||| || | ||||||||| |||||    
T  2888152 agagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtg 2888063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2878647 - 2878582
Alignment:
Q  9 gaaatgaagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcct 74  Q
    ||||| ||||||||| |||||| ||| |||||| ||||||||| ||||||||||||| ||||||||    
T  2878647 gaaataaagatccttggaaccaagagcaggttttcccaattcttctataagttgcttatttctcct 2878582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 2896564 - 2896592
Alignment:
Q  337 agactaaaaacaatattgaatgcactttt 365  Q
    |||||||||||||||||||||||||||||    
T  2896564 agactaaaaacaatattgaatgcactttt 2896592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 287
Target Start/End: Original strand, 44222320 - 44222465
Alignment:
Q  142 attagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagtt 241  Q
    ||||| |||||| || || || ||||||||||| | |||   ||| |||||||| ||| || |||||||||||| | ||||||||||||||||||| |||    
T  44222320 attagtttacctatataaatctgaatttttgtacaaatcggtaaagtcaacacccaaattaagttcttgtgctgtagttgtaacttccaacatccatgtt 44222419  T
Q  242 gctggattatagccatctttaattttactaaccccttcgatgctct 287  Q
    ||||| ||||| |||||||| ||||||||||| || || |||||||    
T  44222420 gctgggttatatccatctttgattttactaactccgtcaatgctct 44222465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 44210141 - 44210264
Alignment:
Q  164 gaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaa 263  Q
    ||||||||||| | |||   |||||||||||| ||| || |||||||||| | | ||||||||||||||||||| |||||||| ||||| || ||||| |    
T  44210141 gaatttttgtacaaatcggtaaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttga 44210240  T
Q  264 ttttactaaccccttcgatgctct 287  Q
    ||||||| || || || |||||||    
T  44210241 ttttactcactccgtcaatgctct 44210264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 44233183 - 44233285
Alignment:
Q  185 aaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgc 284  Q
    |||||||| || ||| || |||||||||| | | ||||||||||||||||||| |||||||| ||||| || ||||| |||||||| || || || ||||    
T  44233183 aaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgc 44233282  T
Q  285 tct 287  Q
    |||    
T  44233283 tct 44233285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 39573967 - 39574025
Alignment:
Q  205 ttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaa 263  Q
    ||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  39573967 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaa 39574025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 39588464 - 39588509
Alignment:
Q  224 acttccaacatccaagttgctggattatagccatctttaattttac 269  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  39588464 acttccaaaatccaagttgctggattatatccatctttaatgttac 39588509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 39367064 - 39367000
Alignment:
Q  214 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 278  Q
    |||| |||| |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39367064 tgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacacctt 39367000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 39563358 - 39563426
Alignment:
Q  205 ttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaac 273  Q
    ||||| || |||| |||| |||||||||||||| |||||||||||||| || |||||||| || |||||    
T  39563358 ttcttttgatgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaac 39563426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 1084088 - 1084128
Alignment:
Q  224 acttccaacatccaagttgctggattatagccatctttaat 264  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  1084088 acttccaacatccatgttgctggattataaccgtctttaat 1084128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 39339620 - 39339556
Alignment:
Q  214 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 278  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||    
T  39339620 tgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 39339556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 39354461 - 39354397
Alignment:
Q  214 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 278  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||    
T  39354461 tgaagttgtgacttccaacatccatgttgctggattataaccgtctttgatctttctaacacctt 39354397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 2159897 - 2159941
Alignment:
Q  220 tgtaacttccaacatccaagttgctggattatagccatctttaat 264  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||    
T  2159897 tgtaacttccaacatccatgttgcaggattataaccatctttaat 2159941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University