View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_19 (Length: 319)
Name: NF13998_low_19
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 52296211 - 52295921
Alignment:
| Q |
14 |
caccatatgcatcatttacaatatatacatattatacgtttaacatttgnnnnnnnnnnnnnnnnntgtagatatatagtgaatgcttacgacggaacaa |
113 |
Q |
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| T |
52296211 |
caccatatgcatcatttacaatatatacatattatacgtttaacatttgaaaaaagaagaaaaaaatgtagatatatagtgaatgcttacgacggaacaa |
52296112 |
T |
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| Q |
114 |
tctcgaatgggccgagtcaaagtatgatcagattgaacctgaagaggaataagaggagcacccacaagcttaagcaatgcggtgaattcattatttgaag |
213 |
Q |
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| T |
52296111 |
tctcgaatgggccgagtcaaagtatgatcagattgaacctgaagaggaataagaggagcacccacaagcttaagcaatgcggtgaattcattatttgaag |
52296012 |
T |
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| Q |
214 |
gtgcagatagaccagatgacttatcagcaacttgagcattattcattagagttttcaagttctgccaacgattgaaaccagtggtgcccat |
304 |
Q |
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| T |
52296011 |
gtgcagatagaccagatgacttatcagcaacttgagcattattcattagagttttcaagttctgccaacgattgaaaccagtggtgcccat |
52295921 |
T |
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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 6825302 - 6825215
Alignment:
| Q |
126 |
cgagtcaaagtatgatcagattgaacctgaagaggaataagaggagcacccacaagcttaagcaatgcggtgaattcattatttgaag |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | |||| ||| ||||| |||||||| || ||||||||||||| |||| |
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| T |
6825302 |
cgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatgaattcattattagaag |
6825215 |
T |
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